View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17048_high_8 (Length: 316)
Name: NF17048_high_8
Description: NF17048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17048_high_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 316
Target Start/End: Complemental strand, 32829095 - 32828791
Alignment:
| Q |
12 |
tatactagaaatcacggtgagtgtaatgtgggtcatgatttgaaccctgattcaggggtgaggagaagctcgcgggctaggcgtgccccggttttgcttg |
111 |
Q |
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| T |
32829095 |
tatactagaaatcacggtgagtgtaatgtgggtcatgatttgaaccctgattcaggggtgaggagaagctcgcgggctaggcgtgccccggttttgcttg |
32828996 |
T |
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| Q |
112 |
atgtctctcccacaccgaagaagaaacggttgaagttaggaaaggatgtagtgccgaagagtgtggagggtgataaaggtgtagggagagaaagtggggg |
211 |
Q |
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| T |
32828995 |
atgtctctcccacaccgaagaagaaacggttgaagttaggaaaggatgtagttccgaagagtgtggagggtgataaaggtgtagggagagaaagtggggg |
32828896 |
T |
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| Q |
212 |
ttctggtggtgggaattggagtttgaggtcaagatcgaggggtaagaacgtggaatttgaagtgaaggaggagagggaattgagtggtaggaaaaggaag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32828895 |
ttctggtggtgggaattggagtttgaggtcaagatcgaggggtaagaacgtggaatttgaagtgaaggaggagagggaattgagtggtaggaaaaggaag |
32828796 |
T |
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| Q |
312 |
ttgtt |
316 |
Q |
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| T |
32828795 |
ttgtt |
32828791 |
T |
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