View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17049_high_17 (Length: 271)
Name: NF17049_high_17
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 35 - 268
Target Start/End: Complemental strand, 6669042 - 6668809
Alignment:
| Q |
35 |
aagtagttatcaagattttacatctgtcctttaccaaatcaagtagctaaaataagatcaagtagcaaactcattagacgactataaaattcaataattg |
134 |
Q |
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| T |
6669042 |
aagtagttatcaagattttacatctgtcctttaccaaatcaagtagctaaaataagatcaagtagcaaactcattagacgactataaaattcaataattg |
6668943 |
T |
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| Q |
135 |
gtgttgtaactactgctcaaaagtccaatctacaaataaaaatcaaacaactaagaaatttgaaaccatgggattactgcaataacaattaatatagtgg |
234 |
Q |
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| T |
6668942 |
gtgttgtaactactgcacaaaagtccaatctacaaataaaaatcaaacaactaagaaatttgaaaccatgggattactgcaataacaattaatatagtgg |
6668843 |
T |
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| Q |
235 |
atatagcagatacatctagatacatgagttcatc |
268 |
Q |
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| T |
6668842 |
atatagcagatacatctagatacatgagttcatc |
6668809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 17258273 - 17258164
Alignment:
| Q |
154 |
aaagtccaatctacaaataaaaatcaaacaactaagaaatttgaaaccatgggattactgcaataacaattaatatagtggatatagcagatacatctag |
253 |
Q |
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|||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
17258273 |
aaagaccaatctataaataaaaatcaaa-aactaagaaatttgaaagcatgggattactgcaataaaaaataatatagtggatatagcagatacatctag |
17258175 |
T |
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| Q |
254 |
atacatgagtt |
264 |
Q |
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| T |
17258174 |
atacatgagtt |
17258164 |
T |
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