View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17049_high_2 (Length: 705)
Name: NF17049_high_2
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_high_2 |
 | |
|
| [»] chr2 (9 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 5 - 705
Target Start/End: Complemental strand, 11119215 - 11118508
Alignment:
| Q |
5 |
cacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
11119215 |
cacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtcgaatttatcgggagttgttgg |
11119116 |
T |
|
| Q |
105 |
atcgaaattgacaacgttatttccaggtccattttgaggacattgtttttgcaactgttttaagtatgttgggtcaagagttggatcaggtttgccagta |
204 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119115 |
atcaaaattgacaacgttatttccaggtccattttgaggacattgtttttgcaactgttttaagtatgttgggtcaagagttggatcaggtttgccagta |
11119016 |
T |
|
| Q |
205 |
ttttcgaagtcgtataatcgatcaagtatgaaaagacaacgtgctcttcctaatgtatgggcacctgaaattgaagcattcaagtaaatcatatactcct |
304 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11119015 |
ttgtcgaagtcgtataatcgatcaagtatgaaaagacaacgtgctcttcctaatgtatgggcacctgaaattgaaccattcaagtaaatcatatactcct |
11118916 |
T |
|
| Q |
305 |
acatcatgtgctatatagctctagggattaataagatctagtaagatacacannnnnnncggaagaattcgagtttgaatcctagttcaaacaattcctc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11118915 |
acatcatgtgctatatagctctagggattaataagatctagtaagatacacattttttttggaagaattcgagtttgaatcctagttcaaacaattcctc |
11118816 |
T |
|
| Q |
405 |
atcaaaatttaattacttttnnnnnnncttatttgattgttaatggatgcagtttgtccnnnnnnnnnnn-------atccgagtcatgtgaaatctaaa |
497 |
Q |
| |
|
||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11118815 |
atcaagatttaattacttttaaaaatacttatttgagtgttaatggatgcagtttgtccttttttttttttttttttatccgagtcatgtgaaatctaaa |
11118716 |
T |
|
| Q |
498 |
gtcgcgacaactctcctcaatagtttaaattttaatatcactatggttcatgattaaattcaaattaaaaattaaggagactcatatcatcttatctaaa |
597 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
11118715 |
gtcgcga------------------taaattttaatatcactatggtacatgattaaattcaaatttaaaattaaggaggctcatatcatcttatctaaa |
11118634 |
T |
|
| Q |
598 |
tatcatcgtttg----------atattatta--------taggaaatggtgcatgtatttccatacctgagagtgctactagatcaaccgtgttgagacc |
679 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11118633 |
tatcatggtttgatagaaaattatattattattattatttaggaaatggtgcatgtatttgcatacctgagagtgctactagatcaaccgtgttgagtcc |
11118534 |
T |
|
| Q |
680 |
ttgagcagcaaaggaagatttaagtt |
705 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
11118533 |
ttgagcagcaaaggaagatttaagtt |
11118508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 5 - 280
Target Start/End: Complemental strand, 11111444 - 11111169
Alignment:
| Q |
5 |
cacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
104 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||| |
|
|
| T |
11111444 |
cacccggtgttgagaataattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgg |
11111345 |
T |
|
| Q |
105 |
atcgaaattgacaacgttatttccaggtccattttgaggacattgtttttgcaactgttttaagtatgttgggtcaagagttggatcaggtttgccagta |
204 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||| ||||| ||||| ||| ||||||||| ||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
11111344 |
gtcgaaattaacacggttatttccagttccattctgagggcattggtttcgcaactgttgtaagtatgttgtatcaagagttggatcgggtttgccagta |
11111245 |
T |
|
| Q |
205 |
ttttcgaagtcgtataatcgatcaagtatgaaaagacaacgtgctcttcctaatgtatgggcacctgaaattgaag |
280 |
Q |
| |
|
|| | ||||| ||||||||||||||| |||||||| ||||||||||| || |||||||| ||||||||| |||||| |
|
|
| T |
11111244 |
ttgttgaagttgtataatcgatcaaggatgaaaaggcaacgtgctctcccaaatgtatgagcacctgaagttgaag |
11111169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 10 - 302
Target Start/End: Original strand, 10793355 - 10793649
Alignment:
| Q |
10 |
ggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttggatcga |
109 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||| |||||||||| ||||| |||| |
|
|
| T |
10793355 |
ggtgttgaaaacaattcttggtcactttgaagcaaaccctttttaacctgaagattgttgtagaagttcttgtccaatgtatcaggagtagttgggtcga |
10793454 |
T |
|
| Q |
110 |
aattgacaacgttatttccaggtccattttgaggacattgtttttgcaactgttttaagtatgttgggtcaagagttggatcaggtttgccagtattttc |
209 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
10793455 |
aatttacacggttatttccaggtccattttgaggacattcgttttgcaattgttttaagtacgttgtatcaagagttggatcaggttcgccagtattgct |
10793554 |
T |
|
| Q |
210 |
gaagtcgtataatcgatcaagtatgaaaagacaacgtgctcttcctaatgtatgggcacctg--aaattgaagcattcaagtaaatcatatactc |
302 |
Q |
| |
|
||||| |||||||||||||| | ||| |||||||||||| || ||||| || ||||||| | ||| |||||| ||||||||||||||||| |
|
|
| T |
10793555 |
gaagttgtataatcgatcaacgaataaagaacaacgtgctctcccaaatgtgtgtgcacctggaatattcaagcatataagtaaatcatatactc |
10793649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 642 - 705
Target Start/End: Original strand, 10793704 - 10793767
Alignment:
| Q |
642 |
atacctgagagtgctactagatcaaccgtgttgagaccttgagcagcaaaggaagatttaagtt |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10793704 |
atacctgagagtgctactagatcaaccgtgttgagaccttgagcagcaaaggaagatttaagtt |
10793767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 25 - 283
Target Start/End: Complemental strand, 11137734 - 11137476
Alignment:
| Q |
25 |
tcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttggatcgaaattgacaacgttat |
124 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| ||||| || |||||| | | ||||| |
|
|
| T |
11137734 |
tcttggtcactctgaagcaaaccctttttaccctgaagattggagtagtagttcttgtcaaatttatcaggagtcgttgggtcaaaattggcgaggttat |
11137635 |
T |
|
| Q |
125 |
ttccaggtccattttgaggacattgtttttgcaactgttttaagtatgttgggtcaagagttggatcaggtttgccagtattttcgaagtcgtataatcg |
224 |
Q |
| |
|
|| |||||| | ||||||| ||| | || | || ||| || |||| | |||||||||||||||||| || ||| | ||||| ||||||||| |
|
|
| T |
11137634 |
ttggtggtccaccattaggacatattttacgtaattcttgtaaataagttgtattaagagttggatcaggttttcctgtactgctgaagttgtataatcg |
11137535 |
T |
|
| Q |
225 |
atcaagtatgaaaagacaacgtgctcttcctaatgtatgggcacctgaaattgaagcat |
283 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||| |||||| | ||||||||| |
|
|
| T |
11137534 |
atcagtgatgaaagtgcaacgtgctcttccgaatgtatgagcacctacatttgaagcat |
11137476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 11150021 - 11149919
Alignment:
| Q |
12 |
tgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttggatcgaaa |
111 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
11150021 |
tgttgagaacaactcttgatcactttggagcaaaccctttttcacttgaagattagagtaatagttcttgtcaaatttatcaggagtcgttggatcgaaa |
11149922 |
T |
|
| Q |
112 |
ttg |
114 |
Q |
| |
|
||| |
|
|
| T |
11149921 |
ttg |
11149919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 11156689 - 11156587
Alignment:
| Q |
12 |
tgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttggatcgaaa |
111 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
11156689 |
tgttgagaacaactcttgatcactttggagcaagccctttttcacttgaagattggagtaatagttcttgtcaaatttatcaggagtcgttggatcgaaa |
11156590 |
T |
|
| Q |
112 |
ttg |
114 |
Q |
| |
|
||| |
|
|
| T |
11156589 |
ttg |
11156587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 623 - 704
Target Start/End: Complemental strand, 11110640 - 11110559
Alignment:
| Q |
623 |
aaatggtgcatgtatttccatacctgagagtgctactagatcaaccgtgttgagaccttgagcagcaaaggaagatttaagt |
704 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
11110640 |
aaatggtgcatgtatatatatacctgagagtgctactaggtcaaccgtgttaagtccttgagcagcaaaggcagatttaagt |
11110559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 11146052 - 11145957
Alignment:
| Q |
12 |
tgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttggatc |
107 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
11146052 |
tgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaatagttcttgtcaaatttatcaggagtagttggatc |
11145957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University