View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17049_high_5 (Length: 451)
Name: NF17049_high_5
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Complemental strand, 7184734 - 7184315
Alignment:
| Q |
20 |
aaaacttggggaatcaaaattagcttgcagtgtttcaaacctagattgcaaacggatttgtaatacaatgtaaccatggta-gggcactaaaacactatc |
118 |
Q |
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| T |
7184734 |
aaaacttggggaatcaaaattagcttgcagtgtttcaaacctagattgcaaacggatttgtaatacaatgtaaccatggtaagggcactgaaacactatc |
7184635 |
T |
|
| Q |
119 |
tccagcgttgcaaatggtcttttagagagaggatatacaccaagattcggtgcaaataaggctagaaaagcgcgctcataatggattttaaatgcctg-- |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7184634 |
tccagcgttgcaagtggtcttttagagagaggatatacaccaagattcggtgcaaataaggctagaaaagcgcgctcataatggattttaaatgcctgct |
7184535 |
T |
|
| Q |
217 |
-aaatgggaaatctgtttaacagtaatggcattgagtgtacagtaatctacctagaatctccaactagtttcttagagacaaacgtactaatcacttggc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7184534 |
gaaatgggaaatctgtttaacagtaatggcattgagtgtacagtaatctacctagaatctccaactagtttcttagagacaaacgtactaatcacttggc |
7184435 |
T |
|
| Q |
316 |
ataacatctagatcaaataacttcccctccctagatcaaatactcaatgacatctttcaactgcaaacagtcatctgtagcatggcttgaatacttgtgg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7184434 |
ataacatctagatcaaataacttcccctccctagatcaaatactcaatgacatctttcaactgcaaacagtcatctgtagcatggcttgaatactggtgg |
7184335 |
T |
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| Q |
416 |
aatctgcattatttgctttt |
435 |
Q |
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|||||||||||||||||||| |
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| T |
7184334 |
aatctgcattatttgctttt |
7184315 |
T |
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