View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17049_high_6 (Length: 436)
Name: NF17049_high_6
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_high_6 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 436
Target Start/End: Original strand, 3132897 - 3133321
Alignment:
| Q |
10 |
aagaatatagataatactagctggctaggggagagtctaatggcatacttgaaattggtccacagttttgtacattttgatatttttcaacttcataaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3132897 |
aagaatatagataatactagctggctaggggagagtctaatggcatacttgaaattggtccacagttttgtacattttgatatttttcaacttcataaaa |
3132996 |
T |
|
| Q |
110 |
cannnnnnnnccagtatgtgttgtgttgaacctaacttaataccagattttgcaattttacccaaaactttatatgattggttgcttaatatgaaaatta |
209 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3132997 |
cattttttttccagtatgtgttgt--tgaacctaacttaataccagattttgcaattttacccaaaactttatatgattggttgcttaatatgaaaatta |
3133094 |
T |
|
| Q |
210 |
ttctattattaagtatttttgaagtattaaaatcagtcacatatttgtttggataccataagggttaaatccagaaagtaattagagtatagaaaaagaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3133095 |
ttctattattaagtatttttgaagtattaaaatcagtcacatatttgtttggataccataagggttaaatccagaaagtaattagagtatagaaaaagaa |
3133194 |
T |
|
| Q |
310 |
aatgaaacaataggaatatacagggctacaaggcacatactgtggacgatctttcctttgtctaatatattgaagggaatccctgatgaaaaacattagc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3133195 |
aatgaaacaataggaatatacagggctacaaggcacatactgtggacgatctttcctttgtctaatatattgaagggaatccctgatgaaaaacattagc |
3133294 |
T |
|
| Q |
410 |
accataatactatactacaagtgtaca |
436 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3133295 |
accataatactatactacaagtgtaca |
3133321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University