View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17049_high_8 (Length: 401)
Name: NF17049_high_8
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 40649164 - 40649558
Alignment:
| Q |
1 |
aatggaagagttttggtacaatatttgttttcttaactaatgagttagtgattatttttgttaatcaaatcattatttgtgtaaactcttatatacttta |
100 |
Q |
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| T |
40649164 |
aatggaagagttttggtacaatatttgttttcttaactaatgagttagtgattatttttgttaatcaaatcattatttgtgtaaactcttatatacttta |
40649263 |
T |
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| Q |
101 |
agaaaaatcatttcttattaaaaaccatcattcattgtctatgcattaaactaattttctatatctttggtacaatatttgtaactcaaagtttgatccg |
200 |
Q |
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| T |
40649264 |
agaaaaatcatttcttattgaaa-ccatcattcattgtctatacattaaactaattttctatatctttggtacaatatttgtaactcaaagtttgatccg |
40649362 |
T |
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| Q |
201 |
attaccaacagaagttgggacaaatgattgaatattttgttctgcattaaatgtgatttgagttcaaattcgaaattgtttttaatgaattatacgtaaa |
300 |
Q |
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| T |
40649363 |
attaccaacagaagttgggacaaatgattgaatattttgttctgcattaaatgtgatttgagttcaaattcgaagttgtttttaatgaattatacgtaaa |
40649462 |
T |
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| Q |
301 |
tttcatcatgtatatgtttgtcaatattaatggttatctctagcctttcatagtttctctaggtaaataattctatgaatttaaattcttctcagt |
396 |
Q |
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| T |
40649463 |
tttcatcatgtatatgtttgtcaatattaatggttatctctagcctttcatagtttctctaggtaaataattctatgaatttaaattcttttcagt |
40649558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 40650321 - 40650261
Alignment:
| Q |
243 |
tgcattaaatgtgatttgagttcaaattcgaaattgtttttaatgaattatacgtaaattt |
303 |
Q |
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| T |
40650321 |
tgcattagatgtgatttgagttcaaattcaaaatgattcttaatgaattatacgttaattt |
40650261 |
T |
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