View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17049_low_13 (Length: 367)
Name: NF17049_low_13
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_low_13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 36 - 367
Target Start/End: Original strand, 51416613 - 51416939
Alignment:
| Q |
36 |
atgaatggaggcgcgtaaagatgacgagggagagggcggaggagcagaaagagtttcatgttgaccaggcggcagaggagttcacagagatggttggatc |
135 |
Q |
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| T |
51416613 |
atgaatggaggcgcgtaaagatgacgagggagagggcggaggagcagaaagactttcatgttgaccaggcggcagaggagttcacagagatggttggatc |
51416712 |
T |
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| Q |
136 |
atcatcattgttaatgctgattgagtgagatagcacatcatgtgcatgtcgcaggtgaatcatattattcaagatcagatatctgtagttgttgtagggt |
235 |
Q |
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| T |
51416713 |
atcatcattgttaatgctgattgagtgagatagcacatcatgtgcatgtagcaggtgaatcatattattcaagatcagatatctgtagttgttgtagggt |
51416812 |
T |
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| Q |
236 |
acgctattatttgatcaatataattgacctgcaatggatattcgtactgtactgtactttactgttatgcattttatcaagtatcaacagctagcttttt |
335 |
Q |
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| T |
51416813 |
acgttattatttgaccaatataattgacctgcaatggatattcgtactgtactg-----tactgttatgcattttatcaagtatcaacagctagcttttt |
51416907 |
T |
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| Q |
336 |
aaactttacgacgttgtttaattaaccttccc |
367 |
Q |
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| T |
51416908 |
aaactttacgacgttgtttcattaaccttccc |
51416939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 51413628 - 51413666
Alignment:
| Q |
81 |
agaaagagtttcatgttgaccaggcggcagaggagttca |
119 |
Q |
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| T |
51413628 |
agaaagagtttcatgttgaccaggcggcggaagagttca |
51413666 |
T |
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