View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17049_low_14 (Length: 338)
Name: NF17049_low_14
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_low_14 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 2938947 - 2938624
Alignment:
| Q |
14 |
tttcgtgccatgttgaatgcaaaaagattaaagtttgaatctttcttcatgatgctttttaaggtcatttgatttttaaggagcattagctttgttttgc |
113 |
Q |
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| T |
2938947 |
tttcgtgccatgttgaatgcaaaaagattaaagtttgaatcttttttcatgatgctttttaaggtcatttgatttttaaggagcattagctttgttttgc |
2938848 |
T |
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| Q |
114 |
atataaaatannnnnnnnnataatagatgattattaaaccaaatgtaacacttcatataggaacggaacatgaagnnnnnnnntagggaaacaaaacacc |
213 |
Q |
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| T |
2938847 |
atatagaatatttttttt-ataatagatgattattaaaccaaatgaaacacttcaaataggaacgcaacatgaagaaaaaaaatagggaaacaaaacacc |
2938749 |
T |
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| Q |
214 |
ttatatgaagacatctattgataagaagattatctttcgttgcaaataaattctttgttctgcctacttctcatccttattaaaaccaccaaagtaatac |
313 |
Q |
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| T |
2938748 |
ttaaatgaagacatctattgataagaagattatctttcgttgcaaataaattctttcttctgcctacttctcatccttattaaaaccaccaaagtaatac |
2938649 |
T |
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| Q |
314 |
caatctttgattattaccttacttt |
338 |
Q |
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| T |
2938648 |
caatctttgattattaccttacttt |
2938624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 2939259 - 2939356
Alignment:
| Q |
18 |
gtgccatgttgaatgcaaaaagattaaagtttgaatctttcttcatgatgctttttaaggtcatttgatttttaaggagcattagctttgttttgcata |
116 |
Q |
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| T |
2939259 |
gtgccgtgttgaatgcaaaaatattaaaggttgaatcttt-ttcatgatgctttttaatgtcatttgatttttaaggaggattagctttgatttacata |
2939356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 33523595 - 33523516
Alignment:
| Q |
40 |
attaaagtttgaatctttcttcatgatgctttttaaggtcatttgatttttaaggagcattagctttgttttgcatataa |
119 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||| || |||| ||||| ||| ||||||| |
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| T |
33523595 |
attaaaggttgaatcttttctcatgatgctttttaaggtcatttgatttttaaagattattaactttgatttacatataa |
33523516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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