View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17049_low_15 (Length: 331)

Name: NF17049_low_15
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17049_low_15
NF17049_low_15
[»] chr4 (21 HSPs)
chr4 (86-237)||(31334975-31335127)
chr4 (106-237)||(9033881-9034013)
chr4 (106-237)||(44506270-44506402)
chr4 (86-234)||(39502725-39502874)
chr4 (86-237)||(40590982-40591132)
chr4 (86-237)||(56080734-56080884)
chr4 (106-237)||(29051878-29052011)
chr4 (113-234)||(37995611-37995733)
chr4 (108-235)||(26695982-26696110)
chr4 (86-237)||(24072524-24072662)
chr4 (17-84)||(31335766-31335833)
chr4 (86-162)||(39499386-39499462)
chr4 (86-237)||(51790033-51790182)
chr4 (109-237)||(45620248-45620376)
chr4 (106-164)||(127937-127995)
chr4 (271-331)||(31334903-31334963)
chr4 (286-331)||(44506433-44506478)
chr4 (162-237)||(2623209-2623284)
chr4 (179-237)||(127877-127935)
chr4 (286-331)||(54231036-54231081)
chr4 (289-329)||(46235549-46235589)
[»] chr2 (8 HSPs)
chr2 (106-237)||(5614459-5614591)
chr2 (86-237)||(15805676-15805826)
chr2 (108-237)||(32597511-32597641)
chr2 (108-234)||(30518607-30518734)
chr2 (106-237)||(27641179-27641311)
chr2 (286-331)||(15805600-15805645)
chr2 (286-331)||(32597672-32597717)
chr2 (286-331)||(34580280-34580325)
[»] chr5 (14 HSPs)
chr5 (86-237)||(25897841-25897993)
chr5 (106-237)||(42393950-42394082)
chr5 (108-237)||(22213422-22213553)
chr5 (106-237)||(13946298-13946430)
chr5 (86-237)||(30493815-30493953)
chr5 (86-237)||(30534158-30534296)
chr5 (86-237)||(26945797-26945933)
chr5 (106-237)||(26674209-26674327)
chr5 (108-150)||(36275692-36275734)
chr5 (286-331)||(28612012-28612057)
chr5 (286-331)||(13946223-13946268)
chr5 (286-331)||(22213584-22213629)
chr5 (185-234)||(36275735-36275784)
chr5 (286-331)||(42393874-42393919)
[»] chr3 (20 HSPs)
chr3 (106-237)||(8082266-8082398)
chr3 (106-237)||(13696581-13696713)
chr3 (106-237)||(41958131-41958263)
chr3 (108-237)||(11685666-11685796)
chr3 (106-237)||(53151457-53151589)
chr3 (108-236)||(18996728-18996857)
chr3 (108-236)||(18999267-18999396)
chr3 (108-237)||(3777413-3777543)
chr3 (106-204)||(45572811-45572910)
chr3 (108-237)||(37609018-37609147)
chr3 (108-237)||(28246789-28246918)
chr3 (106-164)||(24373222-24373280)
chr3 (86-164)||(30801001-30801078)
chr3 (165-237)||(30260889-30260961)
chr3 (120-210)||(20307463-20307553)
chr3 (286-331)||(3777574-3777619)
chr3 (286-331)||(30800864-30800909)
chr3 (106-204)||(20329426-20329524)
chr3 (180-237)||(24373283-24373340)
chr3 (86-133)||(30260853-30260898)
[»] chr7 (15 HSPs)
chr7 (106-237)||(20372361-20372493)
chr7 (108-237)||(47266405-47266535)
chr7 (86-237)||(44079973-44080123)
chr7 (86-237)||(43174957-43175109)
chr7 (86-204)||(41743257-41743376)
chr7 (106-207)||(22916630-22916732)
chr7 (86-237)||(30586196-30586332)
chr7 (108-164)||(31293179-31293235)
chr7 (86-237)||(49141880-49142019)
chr7 (166-237)||(31293224-31293295)
chr7 (286-331)||(31578044-31578089)
chr7 (108-163)||(31577554-31577609)
chr7 (106-164)||(27620062-27620120)
chr7 (286-331)||(31293325-31293370)
chr7 (286-331)||(41743423-41743468)
[»] chr8 (17 HSPs)
chr8 (108-237)||(41486625-41486755)
chr8 (106-237)||(18916065-18916197)
chr8 (108-237)||(2001463-2001593)
chr8 (108-237)||(38526638-38526768)
chr8 (106-237)||(1197473-1197604)
chr8 (86-237)||(35563668-35563804)
chr8 (139-237)||(9686516-9686615)
chr8 (149-237)||(11661224-11661313)
chr8 (86-237)||(2734984-2735122)
chr8 (106-164)||(38567512-38567570)
chr8 (106-202)||(43596250-43596347)
chr8 (109-164)||(24697702-24697757)
chr8 (286-331)||(9686646-9686691)
chr8 (286-331)||(11661148-11661193)
chr8 (286-331)||(18915989-18916034)
chr8 (287-331)||(38567005-38567049)
chr8 (193-237)||(38567081-38567125)
[»] chr1 (19 HSPs)
chr1 (106-237)||(45360326-45360458)
chr1 (106-237)||(40125567-40125699)
chr1 (108-237)||(21620197-21620327)
chr1 (108-236)||(5555350-5555479)
chr1 (106-234)||(19565320-19565449)
chr1 (149-237)||(25473748-25473837)
chr1 (108-164)||(14236548-14236604)
chr1 (86-161)||(43069011-43069084)
chr1 (87-164)||(3656651-3656728)
chr1 (108-150)||(32550356-32550398)
chr1 (120-164)||(4643754-4643798)
chr1 (166-234)||(4643787-4643855)
chr1 (166-237)||(3656717-3656788)
chr1 (166-237)||(14236593-14236664)
chr1 (286-331)||(43068873-43068918)
chr1 (185-237)||(32550303-32550355)
chr1 (118-203)||(25304260-25304347)
chr1 (293-331)||(4643895-4643933)
chr1 (286-331)||(45360489-45360534)
[»] chr6 (4 HSPs)
chr6 (108-237)||(24765358-24765488)
chr6 (108-218)||(4653730-4653841)
chr6 (106-164)||(33756547-33756604)
chr6 (166-235)||(33756593-33756661)
[»] scaffold0051 (2 HSPs)
scaffold0051 (108-164)||(59174-59230)
scaffold0051 (166-237)||(59219-59290)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 31335127 - 31334975
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtc 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| |||| |||||||||||||||||||||||    
T  31335127 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacatttccatctctttatatgagaataaattcatgggaataatggaagtc 31335028  T
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||| || ||||||||||||||| ||||||||||||| |||||||||||||||    
T  31335027 atggaaagttacttcattcctaggaacctttataccctagaatatttttttct 31334975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 9034013 - 9033881
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaata-attcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||| || ||||| ||||||    
T  9034013 ttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgagaatatattcatgggaataatggaagttatggaaagttactccattcc 9033914  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || |||||||||||||| ||||||||||||||    
T  9033913 caggaacctttatacccaggaatatttttttct 9033881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 44506270 - 44506402
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaata-attcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||| ||||||| ||||| ||||||    
T  44506270 ttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgagaatatatttatgggaataatggaagttatgggaagttactccattcc 44506369  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     |  |||||||||||||||||||||||||||||    
T  44506370 caagaacctttatacccaagaatatttttttct 44506402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 86 - 234
Target Start/End: Original strand, 39502725 - 39502874
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtc 184  Q
    ||||||||| |||||  || | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||     
T  39502725 gaagttacaatttttttttttaaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagtt 39502824  T
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttt 234  Q
    ||||||| ||||| |||||| || |||||||||||| | |||| ||||||    
T  39502825 atgggaagttactccattcccaggaacctttatacctaggaatttttttt 39502874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 40591132 - 40590982
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtc 184  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||  |||| ||||| |||||| ||||||||||||||||||||     
T  40591132 gaagttacaattttt--tttttaaatctatgcataatatcatgggaatgcacattcccacctcttaacatgagaataaattcatgggaataatggaagtt 40591035  T
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    ||||||| ||||| |||||| || |||||||||| ||| ||||||||||||||    
T  40591034 atgggaagttactccattcccaggaacctttatatccaggaatatttttttct 40590982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 56080734 - 56080884
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtc 184  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||  |||| ||||| |||||| ||||||||||||||||||||     
T  56080734 gaagttacaattttt--tttttaaatctatgcataatatcatgggaatgcacattcccacctcttaacatgagaataaattcatgggaataatggaagtt 56080831  T
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||| || ||||| |||||| || |||||||||||||| ||||||||||||||    
T  56080832 atggaaagttactccattcccaggaacctttatacccaggaatatttttttct 56080884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 29052011 - 29051878
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat--aattcatgggaataatggaagtcatgggaaattacttcattc 203  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||  |||||||||||||||||||||| ||| ||| ||||| |||||    
T  29052011 ttaaatctatgcataatatcatgggaatgcacattctcatctctttacatgggaataaaattcatgggaataatggaagttatgagaagttactccattc 29051912  T
Q  204 ctagaaacctttatacccaagaatatttttttct 237  Q
    | |  ||| |||||||||| ||||||||||||||    
T  29051911 ccatgaacttttatacccaggaatatttttttct 29051878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 37995611 - 37995733
Alignment:
Q  113 tatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattcctagaaac 211  Q
    |||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||| ||||||| ||||| |||||| || |||    
T  37995611 tatgtataatatcatgggaatgcacattctcatctctttacatgggaataaattcataggaataatggaagttatgggaagttactccattccaaggaac 37995710  T
Q  212 ctttatacccaagaatatttttt 234  Q
    ||||||||||| |||||||||||    
T  37995711 ctttatacccatgaatatttttt 37995733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 108 - 235
Target Start/End: Original strand, 26695982 - 26696110
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||| |||||  ||| | |    
T  26695982 aaatctatgcataatatcatgggaatgtacattcccatctctttacatgggaataagtttatgggaataatggaagttatgggaagttactctatttcca 26696081  T
Q  207 gaaacctttatacccaagaatattttttt 235  Q
      ||||||||||||||  |||||||||||    
T  26696082 tgaacctttatacccagaaatattttttt 26696110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 24072524 - 24072662
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataattcatgggaataatggaagtca 185  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| ||||||             |||||||||||||||||| |    
T  24072524 gaagttacaattttttttttttaaatctatgcataatatcatgggaatgcacattcccatctcttta-------------catgggaataatggaagtta 24072610  T
Q  186 tgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||||| ||||| |||||| || |||||||||||||| ||||||||||||||    
T  24072611 tgggaagttactccattcccaggaacctttatacccaggaatatttttttct 24072662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 31335833 - 31335766
Alignment:
Q  17 agatttcaactgtacctaactacccatggtaccaaaattacaggtacaggtaatggcttgcatgcatt 84  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31335833 agatctcaactgtacctaactacccatggtaccaaaatttcaggtacaggtaatggcttgcatgcatt 31335766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 39499386 - 39499462
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaata 162  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39499386 gaagttacaattttttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaata 39499462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 51790182 - 51790033
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtc 184  Q
    |||||||||||||||   | || |||||| ||| |||||| ||||||||||||||  ||  |||||||||| |||||| ||||||||||||||||||||     
T  51790182 gaagttacatttttt---tttttaatctaggcagaatatcgtgggaatgcacattttcacctctttacatgagaataaattcatgggaataatggaagtt 51790086  T
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    ||| ||| |||||||||||  | ||||||||||| | | ||||||||||||||    
T  51790085 atgagaagttacttcattctcacaaacctttatatctaggaatatttttttct 51790033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 237
Target Start/End: Complemental strand, 45620376 - 45620248
Alignment:
Q  109 aatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattcctag 207  Q
    |||||||| | |||||||||| ||||||||||| ||| ||||||  ||||||||| |||||||||||||||||||| ||||||| |||||||||| |  |    
T  45620376 aatctatggagaatatcatggaaatgcacattctcatctctttat-tgggaataaattcatgggaataatggaagttatgggaagttacttcatttccgg 45620278  T
Q  208 aaacctttatacccaagaatatttttttct 237  Q
     |||||| || | || ||||||||||||||    
T  45620277 gaaccttaatgctcaggaatatttttttct 45620248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 127995 - 127937
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||    
T  127995 ttaaatctatgcataatattatgggaatgtacattcccatctctttacatgggaataat 127937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 31334963 - 31334903
Alignment:
Q  271 taaacattggtataatccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||||||||||||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  31334963 taaacattggtataattcctaaccatgtattctcgggaatgtcattcttaaccttgaaaca 31334903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 44506433 - 44506478
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||    
T  44506433 tccctagccatgtattcccgaaaatgtcattcttaaccttgaaaca 44506478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 2623284 - 2623209
Alignment:
Q  162 aattcatgggaataatggaagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||| ||||||||||||||||| ||||||| |||||  ||||| |  |||| ||||||| | ||||||||||||||    
T  2623284 aatttatgggaataatggaagttatgggaagttactctattcccaagaacccttatacctaggaatatttttttct 2623209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 127935 - 127877
Alignment:
Q  179 gaagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    ||||| ||||||| |||||||||||| |  ||||||||||| || ||||||||||||||    
T  127935 gaagttatgggaagttacttcattcccatgaacctttatactcaggaatatttttttct 127877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 54231036 - 54231081
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||||||||||||| | |||||||||||| |||||||| |||||    
T  54231036 tccctaaccatgtattcttgaaaatgtcattattaaccttcaaaca 54231081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 46235589 - 46235549
Alignment:
Q  289 ctaaccatgtattttcgaaaatgtcattcttaaccttgaaa 329  Q
    ||||||||| ||||||||||||||  |||||||||||||||    
T  46235589 ctaaccatgcattttcgaaaatgttgttcttaaccttgaaa 46235549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 5614591 - 5614459
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||    
T  5614591 ttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagttatgggaagttactccattcc 5614492  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || |||||||||||||||||||||||||||||    
T  5614491 caggaacctttatacccaagaatatttttttct 5614459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 15805826 - 15805676
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaata-attcatgggaataatggaagtc 184  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||     
T  15805826 gaagttacaattttt--tttttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgagaatatattcatgggaataatggaagtt 15805729  T
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    ||||||| ||||| |||||| || |||||||||||||| ||||||||||||||    
T  15805728 atgggaagttactccattcccaggaacctttatacccaggaatatttttttct 15805676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 32597511 - 32597641
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||| ||||||| ||||| |||||  |    
T  32597511 aaatctatgcataatatcatgggaatgcacattcccatctctttacatgagaataaattcatgggaataatggaagttatgggaagttactccattctca 32597610  T
Q  207 gaaacctttatacccaagaatatttttttct 237  Q
    | |||||||||||||| ||||||||||||||    
T  32597611 ggaacctttatacccaggaatatttttttct 32597641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 30518607 - 30518734
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||| |||||  ||||| |    
T  30518607 aaatatatgcataatatcatgggaatgcacattcccatctctttacatgagaataaattcatgggaataatggaagttatgggaagttactcaattccca 30518706  T
Q  207 gaaacctttatacccaagaatatttttt 234  Q
    | |||||||||||||| |||||||||||    
T  30518707 ggaacctttatacccaggaatatttttt 30518734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 27641179 - 27641311
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||| |||||||||||| ||||||| ||||| ||||||    
T  27641179 ttaaatctatgcataatatcatgggaatgcacattctcatctctttacatgagaataaattcatggaaataatggaagttatgggaagttactccattcc 27641278  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || || |||||||||||  |||||||||||||    
T  27641279 caggaatctttatacccagaaatatttttttct 27641311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 15805645 - 15805600
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| |||||||||  || |||||||||||||||||||||||||    
T  15805645 tccctagccatgtattcccggaaatgtcattcttaaccttgaaaca 15805600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 32597672 - 32597717
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| |||||||||  || |||||||||||||||||||||||||    
T  32597672 tccctagccatgtattcccggaaatgtcattcttaaccttgaaaca 32597717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 34580280 - 34580325
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    ||||||||||||||||  ||  ||||||||||||||||||||||||    
T  34580280 tccctaaccatgtattcccgggaatgtcattcttaaccttgaaaca 34580325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 25897993 - 25897841
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaata-attcatgggaataatggaagtc 184  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||     
T  25897993 gaagttacaattttttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttatatgggaatatattcatgggaataatggaagtt 25897894  T
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    || |||| ||||| ||||||||| |||||||||||||| ||||||||||||||    
T  25897893 ataggaagttactccattcctaggaacctttatacccaggaatatttttttct 25897841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 42394082 - 42393950
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| |||||| |||||    
T  42394082 ttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataattgaagttatgggaagttacttaattcc 42393983  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || ||||||||||| || ||||||||||||||    
T  42393982 caggaacctttatactcaggaatatttttttct 42393950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 22213422 - 22213553
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaata-attcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || |||| ||||| |||||| |    
T  22213422 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaatatattcatgggaataatggaaattataggaagttactccattccca 22213521  T
Q  207 gaaacctttatacccaag-aatatttttttct 237  Q
    | |||||||||||||| | |||||||||||||    
T  22213522 ggaacctttatacccaggaaatatttttttct 22213553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 13946430 - 13946298
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||| ||||||| ||||| |||||     
T  13946430 ttaaatctatgcataatatcatgggaatgcacattctcatctctttacatgggaataaattcatggaaataatggaagttatgggaagttactccattct 13946331  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || |||||||||||| | ||||||||||||||    
T  13946330 caggaacctttatacctaggaatatttttttct 13946298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 30493953 - 30493815
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataattcatgggaataatggaagtca 185  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||             |||||||||| |    
T  30493953 gaagttacaattttttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaa-------------taatggaagtta 30493867  T
Q  186 tgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||||| ||||| |||||| || || ||||||||||| ||||||||||||||    
T  30493866 tgggaagttactccattcccaggaatctttatacccaggaatatttttttct 30493815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 30534296 - 30534158
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataattcatgggaataatggaagtca 185  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||             |||||||||| |    
T  30534296 gaagttacaattttttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaa-------------taatggaagtta 30534210  T
Q  186 tgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||||| ||||| |||||| || || ||||||||||| ||||||||||||||    
T  30534209 tgggaagttactccattcccaggaatctttatacccaggaatatttttttct 30534158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 26945797 - 26945933
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataattcatgggaataatggaagtca 185  Q
    ||||||||| |||||  || ||||||||||||||||||| |||||| ||||||||||||| ||||||||||             |||||||||||||| |    
T  26945797 gaagttacaattttt--tttttaaatctatgcataatattatgggactgcacattcccatctctttacatg-------------ggaataatggaagtta 26945881  T
Q  186 tgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||||| ||||| ||||||||| |||||||||||||| ||||||||||||||    
T  26945882 tgggaagttactccattcctaggaacctttatacccaggaatatttttttct 26945933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 26674209 - 26674327
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataattcatgggaataatggaagtcatgggaaattacttcattcct 205  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||||||||             |||||||||||||| ||||||| ||||| |||||||    
T  26674209 ttaaatctatgcataatattatgggactgcacattcccatctctttacatg-------------ggaataatggaagttatgggaagttactccattcct 26674295  T
Q  206 agaaacctttatacccaagaatatttttttct 237  Q
    || |||||||||||||| ||||||||||||||    
T  26674296 aggaacctttatacccaggaatatttttttct 26674327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 36275692 - 36275734
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctt 150  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36275692 aaatctatgcataatatcatgggaatgcacattcccatatctt 36275734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 28612012 - 28612057
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||    
T  28612012 tccctagccatgtattctcgaaaatgtcatttttaaccttgaaaca 28612057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 13946268 - 13946223
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| ||||||||| |||  ||||||||||||||||||||||||    
T  13946268 tccctagccatgtattctcgggaatgtcattcttaaccttgaaaca 13946223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 22213584 - 22213629
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    ||||||||||||||||  ||  ||||||||||||||||||||||||    
T  22213584 tccctaaccatgtattcccgggaatgtcattcttaaccttgaaaca 22213629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 36275735 - 36275784
Alignment:
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttt 234  Q
    ||||||| ||||| |||||| || |||||||||||||| |||||||||||    
T  36275735 atgggaagttactccattccgaggaacctttatacccaggaatatttttt 36275784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 42393919 - 42393874
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| ||||||||| |||  ||||||||||||||||||||||||    
T  42393919 tccctagccatgtattctcgggaatgtcattcttaaccttgaaaca 42393874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 8082398 - 8082266
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaata-attcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||    
T  8082398 ttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaatatattcatgggaataatggaagttatgggaagttactccattcc 8082299  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || |||||||||||||| ||||||||||||||    
T  8082298 caggaacctttatacccaggaatatttttttct 8082266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 13696713 - 13696581
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||    
T  13696713 ttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaataagttcatgggaataatggaagttatgggaagttactccattcc 13696614  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || |||||||||||||| ||||||||||||||    
T  13696613 caggaacctttatacccaggaatatttttttct 13696581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 41958131 - 41958263
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaata-attcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||    
T  41958131 ttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaatatattcatgggaataatggaagttatgggaagttactccattcc 41958230  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || |||||||||||||| ||||||||||||||    
T  41958231 caggaacctttatacccaggaatatttttttct 41958263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 11685796 - 11685666
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| ||| ||||| |||||| |    
T  11685796 aaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagttatgagaagttactccattccca 11685697  T
Q  207 gaaacctttatacccaagaatatttttttct 237  Q
    | |||||||||||||| ||||||||||||||    
T  11685696 ggaacctttatacccaggaatatttttttct 11685666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 53151589 - 53151457
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||     
T  53151589 ttaaatctatgcataatatcatgggaatgcacattctcatctctttacatgggaataaattcatgggaataatggaagttatgggaagttactccattct 53151490  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || |||||||||||| | ||||||||||||||    
T  53151489 caggaacctttatacctaggaatatttttttct 53151457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 18996728 - 18996857
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||| |||||||||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||| |    
T  18996728 aaatttatgcataatatcatgggaatgcacatttccatccctttacatgggaataaattcatgggaataatggaagttatgggaagttactccattccca 18996827  T
Q  207 gaaacctttatacccaagaatatttttttc 236  Q
    | |||||||||||||| |||||||||||||    
T  18996828 ggaacctttatacccaggaatatttttttc 18996857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 18999267 - 18999396
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||| |||||||||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||| |    
T  18999267 aaatttatgcataatatcatgggaatgcacatttccatccctttacatgggaataaattcatgggaataatggaagttatgggaagttactccattccca 18999366  T
Q  207 gaaacctttatacccaagaatatttttttc 236  Q
    | |||||||||||||| |||||||||||||    
T  18999367 ggaacctttatacccaggaatatttttttc 18999396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 3777413 - 3777543
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||  ||||| |||||  |    
T  3777413 aaatctatgcataatatcatgggaatgcacatttccatctctttacatgggaataaattcatgggaataatggaagttatgggaggttactccattctca 3777512  T
Q  207 gaaacctttatacccaagaatatttttttct 237  Q
      |||||||||||| | ||||||||||||||    
T  3777513 agaacctttatacctaggaatatttttttct 3777543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 45572811 - 45572910
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaata-attcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||| ||||| ||||||    
T  45572811 ttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaatatattcatgagaataatggaagttatgggaagttactccattcc 45572910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 37609147 - 37609018
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||||||||||||||||||||  |||| |||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||| |||||  ||||| |    
T  37609147 aaatctatgcataatatcatgataatgtacattctcatctctttacatgggaataagtttatgggaataatggaagtcatgggaagttactctattccca 37609048  T
Q  207 gaaacctttatacccaagaatatttttttct 237  Q
    |||||||||||| ||| ||||||||||||||    
T  37609047 gaaacctttata-ccaggaatatttttttct 37609018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 28246918 - 28246789
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| || ||||||||||| ||| ||| ||||| |||||| |    
T  28246918 aaatctatgcataatatcatgggaatgcacattctcatatctttatatgggaataaattcat-ggcataatggaagttatgagaagttactccattccca 28246820  T
Q  207 gaaacctttatacccaagaatatttttttct 237  Q
      |||||||||| | | ||||||||||||||    
T  28246819 tgaacctttatatctaggaatatttttttct 28246789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 24373222 - 24373280
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  24373222 ttaaatctatgcataatatcatgggaatgcacattctcatctctttacatgggaataat 24373280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 30801078 - 30801001
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    |||||||||||||||  || ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  30801078 gaagttacatttttttttt-ttaaatctatgcataatatcatgggaatgcatattcccatctctttacatggaaataat 30801001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 30260889 - 30260961
Alignment:
Q  165 tcatgggaataatggaagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    ||||||||||||||||||| ||||||| ||||| |||||| || |||||||||||||| ||||||||||||||    
T  30260889 tcatgggaataatggaagttatgggaagttactccattcccaggaacctttatacccaggaatatttttttct 30260961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 20307463 - 20307553
Alignment:
Q  120 aatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattcctagaaa 210  Q
    ||||| |||||||||||||||| ||| |||||||||| |||| ||||||| ||||||||| |||| || |||  |||||||||||| |||||    
T  20307463 aatattatgggaatgcacattctcatctctttacatgagaataaattcataggaataatgaaagttat-ggacgttacttcattcccagaaa 20307553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 3777574 - 3777619
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||    
T  3777574 tccctagccatgtattctcggaaatgtcattcttaaccttgaaaca 3777619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 30800909 - 30800864
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||    
T  30800909 tccctagccatgtattcccgaaaatgtcattcttaaccttgaaaca 30800864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 20329426 - 20329524
Alignment:
Q  106 ttaaatctatgcataatatcatggga---atgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcat 201  Q
    ||||||||||||| ||||||||||||   ||||||     ||| ||||||||||||||||| || || ||||||||| |||| ||||||| |||||||||    
T  20329426 ttaaatctatgcagaatatcatgggaggaatgcact----catctctttacatgggaataaatttataggaataatgaaagttatgggaagttacttcat 20329521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 24373283 - 24373340
Alignment:
Q  180 aagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||| ||||||  ||||| |||||| || |||||||||||||| ||||||||||||||    
T  24373283 aagttatgggaggttactccattcccaggaacctttatacccaggaatatttttttct 24373340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 30260853 - 30260898
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaat 133  Q
    ||||||||| |||||  || ||||||||||||||||||||||||||||    
T  30260853 gaagttacaattttt--tttttaaatctatgcataatatcatgggaat 30260898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 20372493 - 20372361
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |||||  |||||    
T  20372493 ttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagttatgggaagttactcaattcc 20372394  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || |||||||||||||| ||||||||||||||    
T  20372393 caggaacctttatacccaggaatatttttttct 20372361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 47266405 - 47266535
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||  ||||| |||||| |    
T  47266405 aaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagttatgggaggttactccattccca 47266504  T
Q  207 gaaacctttatacccaagaatatttttttct 237  Q
    | |||||||||||||| ||||||||||||||    
T  47266505 ggaacctttatacccaggaatatttttttct 47266535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 44079973 - 44080123
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtc 184  Q
    ||||||||| |||||  || |||||||||||| ||||||||||||||||||||||||| | ||||||||||| ||| |||| |||||||||||| ||||     
T  44079973 gaagttacaattttt--tttttaaatctatgcgtaatatcatgggaatgcacattcccgtctctttacatggaaataaatttatgggaataatgaaagtt 44080070  T
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    ||||||| ||||| |||||| || |||||||||| ||| |||||| |||||||    
T  44080071 atgggaagttactccattcccaggaacctttatatccaggaatatatttttct 44080123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 43174957 - 43175109
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacat-gggaataattcatgggaataatggaagtc 184  Q
    ||||||| | |||||| || ||||||||||||| |||||||||| ||||||||||||||| |||||| || || || |||| ||||||||| || ||||     
T  43174957 gaagttaaaatttttattttttaaatctatgcagaatatcatggaaatgcacattcccatctctttatataggaaaaaattaatgggaatattgaaagtt 43175056  T
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||| || |||||||||||| || |||||||||| | || |||||||||||||    
T  43175057 atggaaagttacttcattcccaggaacctttatatctaaaaatatttttttct 43175109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 41743257 - 41743376
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctt--tacatgggaat-aattcatgggaataatggaag 182  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| ||||  || ||| |||| ||||||| |||||||||||||    
T  41743257 gaagttacaattttt--tttttaaatctatgcataatatcatgggaatgcacattcccatctctttatatatgtgaataaattcataggaataatggaag 41743354  T
Q  183 tcatgggaaattacttcattcc 204  Q
    | ||||||| ||||||||||||    
T  41743355 ttatgggaagttacttcattcc 41743376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 22916732 - 22916630
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    ||||||||||||| |||||||||||||||||||||||||  | ||||||||||||| ||||||||||||||| ||||||  ||| || ||| ||||||||    
T  22916732 ttaaatctatgcagaatatcatgggaatgcacattcccaactttttacatgggaatcaattcatgggaataagggaagttctggaaagttatttcattcc 22916633  T
Q  205 tag 207  Q
    |||    
T  22916632 tag 22916630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 30586196 - 30586332
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataattcatgggaataatggaagtca 185  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||| ||| ||||||             |||||||||||||||||| |    
T  30586196 gaagttacaattttt--tttttaaatctatgcataatatcatgggaatgcacattctcatctcttta-------------catgggaataatggaagtta 30586280  T
Q  186 tgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    || ||| ||||| |||||| || |||||||||||||| ||||||||||||||    
T  30586281 tgagaagttactccattcccaggaacctttatacccaggaatatttttttct 30586332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 31293179 - 31293235
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31293179 aaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaataat 31293235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 49142019 - 49141880
Alignment:
Q  86 gaagttacattttttacttctt-aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataattcatgggaataatggaagtc 184  Q
    |||||||||||||||  || || ||||||||||||||||||||||||||  |||||||||| |||||||||| |||||||             ||||||     
T  49142019 gaagttacattttttttttttttaaatctatgcataatatcatgggaatatacattcccatctctttacatgagaataat-------------ggaagtt 49141933  T
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    ||||||| ||||| |||||| || |||||||||||||| ||||||||||||||    
T  49141932 atgggaagttactccattcccaggaacctttatacccaggaatatttttttct 49141880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 31293224 - 31293295
Alignment:
Q  166 catgggaataatggaagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||||||||||||||||| ||||||| ||||| |||||  |  |||||||||||| ||||||||||||||||    
T  31293224 catgggaataatggaagttatgggaagttactccattctcatgaacctttataccgaagaatatttttttct 31293295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 31578044 - 31578089
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  31578044 tccctaaccatgtatttccgagaatgtcattcttaaccttgaaaca 31578089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 31577554 - 31577609
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa 163  Q
    |||| ||||||||||||||||||||||||||||||||  ||||| | |||||||||    
T  31577554 aaatatatgcataatatcatgggaatgcacattcccacctcttttcttgggaataa 31577609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 27620120 - 27620062
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    ||||||||||||| ||||| ||||||||||||||| |||  |||||||||| |||||||    
T  27620120 ttaaatctatgcagaatattatgggaatgcacatttccacctctttacatgagaataat 27620062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 31293325 - 31293370
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| |||||||||| |||||||||||||||||||||| |||||    
T  31293325 tccctagccatgtatttccgaaaatgtcattcttaaccttaaaaca 31293370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 41743423 - 41743468
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||    
T  41743423 tccctagccatgtattctcggaaatgtcattcttaaccttgaaaca 41743468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 41486625 - 41486755
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||  ||||| |||||| |    
T  41486625 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgagaataaattcatgggaataatggaagttatgggaggttactccattccca 41486724  T
Q  207 gaaacctttatacccaagaatatttttttct 237  Q
    | |||||||||||||| ||||||||||||||    
T  41486725 ggaacctttatacccaggaatatttttttct 41486755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 18916197 - 18916065
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||    
T  18916197 ttaaatctatgtataatatcatgggaatgcacattcccatctctttacatgggaataaattcatgggaataatggaagttatgggaagttactccattcc 18916098  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || ||||||||||||||  |||||||||||||    
T  18916097 caggaacctttatacccagaaatatttttttct 18916065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 2001463 - 2001593
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||| ||| ||| ||||| ||||||||    
T  2001463 aaatctatgcataatatcatgagaatgcacattctcatatcttttcatgggaataaatttatgggaataatggaagttatgagaagttactccattccta 2001562  T
Q  207 gaaacctttatacccaagaatatttttttct 237  Q
    | ||||||||||  || ||||||||||||||    
T  2001563 ggaacctttatattcaggaatatttttttct 2001593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 38526638 - 38526768
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||||||||||| ||| ||| ||||| |||||| |    
T  38526638 aaatctatgcataatatcatgggaatgcacattctcatctctttacatgagaataaattcatgggaataatggaagttatgagaagttactccattccca 38526737  T
Q  207 gaaacctttatacccaagaatatttttttct 237  Q
    | |||||||||||| |  |||||||||||||    
T  38526738 ggaacctttatacctagaaatatttttttct 38526768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 1197604 - 1197473
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||| |||| ||| ||||| ||||||| ||||| ||||||    
T  1197604 ttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgagaataaattcat-ggaaaaatagaagttatgggaagttactccattcc 1197506  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     |  |||||||||||||| ||||||||||||||    
T  1197505 caagaacctttatacccaggaatatttttttct 1197473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 35563804 - 35563668
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataattcatgggaataatggaagtca 185  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||             |||||||||| |    
T  35563804 gaagttacaattttt--tttttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaa-------------taatggaagtta 35563720  T
Q  186 tgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||||||||||| |||||| || |||||||||||||| |||| |||||||||    
T  35563719 tgggaaattactccattcccaggaacctttatacccatgaatttttttttct 35563668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 9686516 - 9686615
Alignment:
Q  139 ttcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    ||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||| ||||| |||||| || ||||||||||| |||||||||||||||||    
T  9686516 ttcccatctctttacataggaataaattcatgggaataatggaagttatgggaagttactccattcccaggaacctttatactcaagaatatttttttct 9686615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 11661313 - 11661224
Alignment:
Q  149 tttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||| || |||||||||||||| ||||||||||||||    
T  11661313 tttacatgggaataaattcatgggaataatggaagttatgggaagttactccattcccaggaacctttatacccaggaatatttttttct 11661224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 2734984 - 2735122
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataattcatgggaataatggaagtca 185  Q
    ||||||||| |||||  || | |||||||||||||||||||||||||||||||||||||| ||||||             |||| ||||||||||||| |    
T  2734984 gaagttacaatttttttttttaaaatctatgcataatatcatgggaatgcacattcccatctcttta-------------catgcgaataatggaagtta 2735070  T
Q  186 tgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||||| |||||  ||||| || |||||||||||||| ||||||||||||||    
T  2735071 tgggaagttactcaattcccaggaacctttatacccaggaatatttttttct 2735122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 38567570 - 38567512
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  38567570 ttaaatctatgcataatatcatgggaatgcacatccccatctctttacatgggaataat 38567512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 43596250 - 43596347
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcatt 202  Q
    ||||||||||||| ||||| | |||||||||||||||||  |||||||| | |||| |||||||||||||||||||||| ||| |||  |||||||||    
T  43596250 ttaaatctatgcagaatattacgggaatgcacattcccaactctttacacgagaataaattcatgggaataatggaagttatgagaagatacttcatt 43596347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 24697702 - 24697757
Alignment:
Q  109 aatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  24697702 aatctatgcagaatatcatgggaatgcacattcacatctctttacatgggaataat 24697757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 9686646 - 9686691
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| |||||||||| ||  ||||||||||||||||||||||||    
T  9686646 tccctagccatgtatttccgggaatgtcattcttaaccttgaaaca 9686691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 11661193 - 11661148
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| |||||||||| ||  ||||||||||||||||||||||||    
T  11661193 tccctagccatgtatttccgggaatgtcattcttaaccttgaaaca 11661148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 18916034 - 18915989
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| |||||||||  || |||||||||||||||||||||||||    
T  18916034 tccctagccatgtattcccggaaatgtcattcttaaccttgaaaca 18915989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 38567049 - 38567005
Alignment:
Q  287 ccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    ||||| |||||||||| ||  ||||||||||||||||||||||||    
T  38567049 ccctagccatgtatttccgggaatgtcattcttaaccttgaaaca 38567005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 38567125 - 38567081
Alignment:
Q  193 ttacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    ||||| |||||| || |||||||||||||| ||||||||||||||    
T  38567125 ttactccattcccaggaacctttatacccaggaatatttttttct 38567081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 45360326 - 45360458
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaata-attcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||| ||||| ||||||    
T  45360326 ttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaatatattcatggaaataatggaagttatgggaagttactccattcc 45360425  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || |||||||||||| | ||||||||||||||    
T  45360426 caggaacctttatacctaggaatatttttttct 45360458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 40125567 - 40125699
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||  ||||     
T  40125567 ttaaatctatgcataatatcatgggaatgcacattcctatatctttacatgggaataaattcatgggaataatggaagttatgggaagttactcgattct 40125666  T
Q  205 tagaaacctttatacccaagaatatttttttct 237  Q
     || |||||||||||| | ||||||||||||||    
T  40125667 caggaacctttataccaaggaatatttttttct 40125699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 21620197 - 21620327
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||| |||||  |||||||    
T  21620197 aaatctatacataatatcatgggaatgtacattcccatctctttacatgggaataagtttatgggaataatggaagttatgggaagttactctattccta 21620296  T
Q  207 gaaacctttatacccaagaatatttttttct 237  Q
    | ||||||||||| || ||||||||||||||    
T  21620297 ggaacctttatactcaggaatatttttttct 21620327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 5555350 - 5555479
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||||||||||| || |||  ||||| || ||| |    
T  5555350 aaatctatgcataatatcatgggaatgcacattctcatctctttacatgcgaataaattcatgggaataatggaagttataggaggttactccactccca 5555449  T
Q  207 gaaacctttatacccaagaatatttttttc 236  Q
    | |||||||||||||| |||||||||||||    
T  5555450 ggaacctttatacccaggaatatttttttc 5555479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 19565320 - 19565449
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattcc 204  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||| |||||  |||||    
T  19565320 ttaaatttatgcataatatcatgggaatgcacattcccatctctttacatgggaataaatttatgggaataatggaagttatgggaagttactctattcc 19565419  T
Q  205 tagaaacctttatacccaagaatatttttt 234  Q
     |  ||||||||| |||| |||||||||||    
T  19565420 cacgaacctttatgcccaggaatatttttt 19565449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 25473837 - 25473748
Alignment:
Q  149 tttacatgggaata-attcatgggaataatggaagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||| || |||||||||||||| ||||||||||||||    
T  25473837 tttacatgggaatatattcatgggaataatggaagttatgggaagttactccattcccaggaacctttatacccaggaatatttttttct 25473748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 14236548 - 14236604
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14236548 aaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaataat 14236604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 43069084 - 43069011
Alignment:
Q  86 gaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaat 161  Q
    ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43069084 gaagttacaattttt--tttttaaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaat 43069011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 3656651 - 3656728
Alignment:
Q  87 aagttacattttttacttcttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    |||||||| |||||  || ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||    
T  3656651 aagttacaattttttttttttaaatctatgcataatatcatgggaatgcatattcccatctctgtacatgggaataat 3656728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 32550398 - 32550356
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctt 150  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32550398 aaatctatgcataatatcatgggaatgcacattcccatatctt 32550356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 4643754 - 4643798
Alignment:
Q  120 aatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  4643754 aatatcatgggaatgcacattcccatctctttacatgggaataat 4643798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 4643787 - 4643855
Alignment:
Q  166 catgggaataatggaagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttt 234  Q
    |||||||||||||||||| ||| |||||||||||||| | || || |||||||| ||||||||||||||    
T  4643787 catgggaataatggaagttatgagaaattacttcattaccaggaatctttatactcaagaatatttttt 4643855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 3656717 - 3656788
Alignment:
Q  166 catgggaataatggaagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||||||||||||||||| ||| ||| ||||| |||||| |  |||||||||||||| ||||||||||||||    
T  3656717 catgggaataatggaagttatgagaagttactccattcccatgaacctttatacccaggaatatttttttct 3656788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 14236593 - 14236664
Alignment:
Q  166 catgggaataatggaagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||||||||||||||||| ||||||| |||||  ||||| || |||||||||||| | ||||||||||||||    
T  14236593 catgggaataatggaagttatgggaagttactctattcccaggaacctttatacctaggaatatttttttct 14236664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 43068918 - 43068873
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||| |||||||||| ||| ||||||||||||||||||||||||    
T  43068918 tccctagccatgtatttccgataatgtcattcttaaccttgaaaca 43068873  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 32550355 - 32550303
Alignment:
Q  185 atgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    ||||||| ||||| |||||| || |||||||||||||| ||||||||||||||    
T  32550355 atgggaagttactccattcccaggaacctttatacccaggaatatttttttct 32550303  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 25304347 - 25304260
Alignment:
Q  118 ataatatcatgggaatgcaca-ttcccatatctttacatgggaat-aattcatgggaataatggaagtcatgggaaattacttcattc 203  Q
    ||||||||||||||||||||| ||||||  |  ||||||| |||| |||||||||||||||  ||||| ||| ||| |||||||||||    
T  25304347 ataatatcatgggaatgcacatttcccactttcttacatgagaataaattcatgggaataagagaagttatgagaagttacttcattc 25304260  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 4643895 - 4643933
Alignment:
Q  293 ccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  4643895 ccatgtattcccgaaaatgtcattcttaaccttgaaaca 4643933  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 45360489 - 45360534
Alignment:
Q  286 tccctaaccatgtattttcgaaaatgtcattcttaaccttgaaaca 331  Q
    ||||||||||||||||  ||  ||||||||||||||||||||||||    
T  45360489 tccctaaccatgtattcccgggaatgtcattcttaaccttgaaaca 45360534  T

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Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 24765358 - 24765488
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||  |    
T  24765358 aaatctatgcaaaatatcatgggaatgcacattcccatctctttacatgggaataagttcatgggaataatggaagttatgggaagttacttcattctca 24765457  T
Q  207 gaaacctttatacccaagaatatttttttct 237  Q
    | || ||||||||||| ||||| ||||||||    
T  24765458 ggaatctttatacccaggaataattttttct 24765488  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 4653730 - 4653841
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataa-ttcatgggaataatggaagtcatgggaaattacttcattccta 206  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||| |    
T  4653730 aaatctatgcataatatcatgggaatgcacattcccatctctttacatgggaataagttcatgggaataatggaagttatgggaagttactccattccca 4653829  T
Q  207 gaaacctttata 218  Q
    | ||||||||||    
T  4653830 ggaacctttata 4653841  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 33756547 - 33756604
Alignment:
Q  106 ttaaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    |||||| ||||||||||||||||||||||||||||||||| | |||||||| |||||||    
T  33756547 ttaaatatatgcataatatcatgggaatgcacattcccatct-tttacatgagaataat 33756604  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 33756593 - 33756661
Alignment:
Q  166 catgggaataatggaagtcatgggaaattacttcattcctagaaacctttatacccaagaatattttttt 235  Q
    |||| ||||||||||||| ||||||| |||||||||||| || ||||||| |||||| ||||||||||||    
T  33756593 catgagaataatggaagttatgggaagttacttcattcccag-aacctttgtacccatgaatattttttt 33756661  T

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Target: scaffold0051 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 59174 - 59230
Alignment:
Q  108 aaatctatgcataatatcatgggaatgcacattcccatatctttacatgggaataat 164  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  59174 aaatctatgcataatatcatgggaatgaacattctcatctctttacatgggaataat 59230  T

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Target: scaffold0051; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 59219 - 59290
Alignment:
Q  166 catgggaataatggaagtcatgggaaattacttcattcctagaaacctttatacccaagaatatttttttct 237  Q
    |||||||||||||||||| ||||||| ||||| |||||| |  |||||||| ||||| ||||||||||||||    
T  59219 catgggaataatggaagttatgggaagttactccattcccatgaacctttaaacccaggaatatttttttct 59290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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