View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17049_low_20 (Length: 273)
Name: NF17049_low_20
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 52812194 - 52812283
Alignment:
| Q |
168 |
tcagaactgaaaccacatcttggctcgatacttcggaaacaataaatatt-aaaaaatggtgacaaaggaaagcaattgaccttttgaag |
256 |
Q |
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| T |
52812194 |
tcagaactgaaaccacatcttggctcgatacttcagaaacaataaatattaaaaaaatggtgacaaaggaaagcaattgaccttttgaag |
52812283 |
T |
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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 52812076 - 52812158
Alignment:
| Q |
50 |
gaattgtgcaacctcaaatcctacccttatatatagacatgagactcttgcattaatcatgtcggcgaacaaccaatatattc |
132 |
Q |
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| T |
52812076 |
gaattgtgcaacctcaaatcccacccttatatatagacatgagactcttgcattaatcatgttggcgaacaaccaatatattc |
52812158 |
T |
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