View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17049_low_22 (Length: 267)

Name: NF17049_low_22
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17049_low_22
NF17049_low_22
[»] chr7 (19 HSPs)
chr7 (1-253)||(45164952-45165204)
chr7 (11-228)||(6335822-6336039)
chr7 (37-120)||(39931122-39931205)
chr7 (28-82)||(17504123-17504177)
chr7 (28-82)||(17549037-17549091)
chr7 (36-117)||(25018847-25018928)
chr7 (19-79)||(18767921-18767981)
chr7 (11-79)||(45993081-45993148)
chr7 (29-119)||(17056052-17056142)
chr7 (29-79)||(33795924-33795974)
chr7 (32-77)||(34104003-34104048)
chr7 (19-79)||(18671683-18671743)
chr7 (32-76)||(19544972-19545016)
chr7 (172-228)||(39931014-39931070)
chr7 (11-78)||(13553752-13553819)
chr7 (20-79)||(34457725-34457784)
chr7 (29-119)||(22819244-22819334)
chr7 (27-71)||(12308690-12308734)
chr7 (45-109)||(17721174-17721238)
[»] chr4 (26 HSPs)
chr4 (1-253)||(19162570-19162822)
chr4 (17-253)||(40688577-40688813)
chr4 (11-228)||(7098987-7099204)
chr4 (11-186)||(54685115-54685290)
chr4 (145-214)||(38296345-38296414)
chr4 (11-79)||(8935579-8935647)
chr4 (11-79)||(29553307-29553375)
chr4 (2-79)||(19114932-19115009)
chr4 (37-214)||(55725138-55725315)
chr4 (11-79)||(23657802-23657870)
chr4 (11-79)||(49925834-49925902)
chr4 (19-78)||(4524194-4524253)
chr4 (31-214)||(5789524-5789707)
chr4 (11-70)||(19648214-19648273)
chr4 (37-123)||(9690953-9691039)
chr4 (45-123)||(48312633-48312711)
chr4 (29-82)||(48805501-48805554)
chr4 (11-79)||(20396087-20396155)
chr4 (31-123)||(46146202-46146294)
chr4 (50-117)||(4551345-4551412)
chr4 (19-81)||(26694441-26694503)
chr4 (29-82)||(9777893-9777946)
chr4 (11-124)||(11586720-11586833)
chr4 (37-78)||(42778769-42778810)
chr4 (11-79)||(10562900-10562968)
chr4 (145-185)||(29328238-29328278)
[»] chr5 (25 HSPs)
chr5 (3-253)||(36256275-36256523)
chr5 (11-214)||(4297741-4297944)
chr5 (11-214)||(41590601-41590804)
chr5 (11-79)||(22094817-22094885)
chr5 (37-115)||(26262962-26263040)
chr5 (31-109)||(31642036-31642114)
chr5 (37-123)||(42039228-42039314)
chr5 (27-80)||(27325285-27325338)
chr5 (11-123)||(15862200-15862312)
chr5 (3-79)||(19513032-19513108)
chr5 (11-123)||(33170163-33170275)
chr5 (19-79)||(38357980-38358040)
chr5 (39-78)||(380434-380473)
chr5 (173-224)||(30731736-30731787)
chr5 (102-168)||(18896145-18896211)
chr5 (37-79)||(20208286-20208328)
chr5 (160-214)||(21077708-21077762)
chr5 (11-109)||(42514225-42514323)
chr5 (2-79)||(6866860-6866937)
chr5 (37-214)||(8299614-8299791)
chr5 (14-75)||(31864749-31864810)
chr5 (37-78)||(34338415-34338456)
chr5 (11-71)||(25856999-25857059)
chr5 (45-109)||(28535212-28535276)
chr5 (45-117)||(42928670-42928742)
[»] chr2 (20 HSPs)
chr2 (17-259)||(2207209-2207451)
chr2 (17-253)||(13416182-13416418)
chr2 (18-105)||(6727319-6727406)
chr2 (36-192)||(43310789-43310945)
chr2 (36-208)||(26146745-26146917)
chr2 (2-79)||(15018173-15018250)
chr2 (38-198)||(10689087-10689246)
chr2 (19-79)||(28400117-28400177)
chr2 (11-78)||(9668574-9668641)
chr2 (144-218)||(44028648-44028722)
chr2 (145-201)||(3251258-3251314)
chr2 (19-79)||(35488350-35488410)
chr2 (27-78)||(22725007-22725058)
chr2 (45-112)||(37445632-37445699)
chr2 (149-191)||(21829338-21829380)
chr2 (37-78)||(1380613-1380654)
chr2 (11-76)||(11234049-11234114)
chr2 (11-120)||(14440249-14440358)
chr2 (11-79)||(11196856-11196924)
chr2 (50-78)||(32191609-32191637)
[»] chr8 (14 HSPs)
chr8 (3-186)||(4310302-4310485)
chr8 (11-214)||(36492886-36493089)
chr8 (45-123)||(38046897-38046975)
chr8 (20-77)||(12134841-12134898)
chr8 (19-79)||(6901422-6901482)
chr8 (11-214)||(20824804-20825007)
chr8 (14-79)||(17659339-17659404)
chr8 (11-79)||(36157659-36157727)
chr8 (19-79)||(44082579-44082639)
chr8 (46-108)||(42649759-42649821)
chr8 (2-79)||(11393915-11393992)
chr8 (11-76)||(43249363-43249427)
chr8 (45-109)||(9923140-9923204)
chr8 (37-125)||(37165642-37165730)
[»] chr3 (17 HSPs)
chr3 (18-251)||(8130463-8130697)
chr3 (36-117)||(52250653-52250734)
chr3 (11-221)||(16179452-16179662)
chr3 (19-79)||(36709423-36709483)
chr3 (19-79)||(45684689-45684749)
chr3 (46-117)||(48930266-48930337)
chr3 (145-192)||(52250579-52250626)
chr3 (19-79)||(21740090-21740150)
chr3 (145-216)||(30188429-30188500)
chr3 (35-117)||(6825351-6825433)
chr3 (36-82)||(7164030-7164076)
chr3 (27-76)||(5342782-5342831)
chr3 (20-81)||(42675004-42675064)
chr3 (145-214)||(48930365-48930434)
chr3 (19-79)||(14864032-14864092)
chr3 (19-79)||(24926255-24926315)
chr3 (11-75)||(43121238-43121302)
[»] chr6 (27 HSPs)
chr6 (11-217)||(15602829-15603035)
chr6 (11-79)||(503099-503167)
chr6 (11-79)||(8264728-8264796)
chr6 (14-72)||(19257407-19257465)
chr6 (11-78)||(13086044-13086111)
chr6 (31-117)||(10362658-10362744)
chr6 (2-79)||(5085593-5085670)
chr6 (2-79)||(23065613-23065690)
chr6 (11-79)||(19256145-19256213)
chr6 (11-123)||(32186188-32186300)
chr6 (9-123)||(19350447-19350561)
chr6 (27-123)||(18588870-18588966)
chr6 (11-79)||(33640423-33640490)
chr6 (27-117)||(7956200-7956289)
chr6 (29-119)||(29056042-29056132)
chr6 (14-79)||(11060429-11060494)
chr6 (11-79)||(17078757-17078825)
chr6 (11-79)||(18051016-18051084)
chr6 (19-79)||(33805293-33805353)
chr6 (31-122)||(13938244-13938335)
chr6 (37-123)||(26514255-26514341)
chr6 (145-191)||(26586839-26586885)
chr6 (31-72)||(18682148-18682189)
chr6 (87-123)||(10919987-10920023)
chr6 (19-79)||(11469082-11469141)
chr6 (37-109)||(14372528-14372600)
chr6 (39-123)||(25350755-25350839)
[»] chr1 (17 HSPs)
chr1 (11-79)||(25504561-25504629)
chr1 (144-217)||(39430915-39430988)
chr1 (11-79)||(39430782-39430850)
chr1 (11-78)||(49264532-49264599)
chr1 (29-119)||(22191309-22191399)
chr1 (11-76)||(20796173-20796238)
chr1 (145-201)||(43913986-43914042)
chr1 (144-183)||(33260156-33260195)
chr1 (144-183)||(33280315-33280354)
chr1 (29-119)||(3074268-3074358)
chr1 (11-93)||(5809086-5809168)
chr1 (29-119)||(21405360-21405450)
chr1 (48-82)||(45270783-45270817)
chr1 (145-190)||(15174746-15174791)
chr1 (144-217)||(20796295-20796368)
chr1 (87-187)||(27393408-27393508)
chr1 (37-109)||(47622614-47622686)
[»] scaffold0024 (1 HSPs)
scaffold0024 (11-180)||(86667-86836)
[»] scaffold0912 (1 HSPs)
scaffold0912 (11-79)||(2440-2508)
[»] scaffold0026 (1 HSPs)
scaffold0026 (37-125)||(67611-67699)
[»] scaffold0061 (1 HSPs)
scaffold0061 (35-117)||(55191-55273)
[»] scaffold0017 (1 HSPs)
scaffold0017 (35-117)||(143361-143443)
[»] scaffold0007 (1 HSPs)
scaffold0007 (11-79)||(182620-182688)
[»] scaffold0016 (1 HSPs)
scaffold0016 (145-208)||(28413-28476)
[»] scaffold0179 (2 HSPs)
scaffold0179 (11-79)||(8037-8105)
scaffold0179 (11-79)||(12971-13039)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 45165204 - 45164952
Alignment:
Q  1 ctcaccctctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagca 100  Q
    ||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45165204 ctcaccctccccttctctaatcctaccaacctccttccaccaaaaagaaccactccggcctccatcctccaacctcccatccctaacaccatatctagca 45165105  T
Q  101 accaacaccctataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactccta 200  Q
    |||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  45165104 accaacaccccataccacaaccctccacgatcaacaagtaatctccaacaccacttccctaacaacgcctcattaaactccctcaaccgcctaactccta 45165005  T
Q  201 aacctccatactcctttctcatacaaactctatgccaacccacccaagatatt 253  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  45165004 aaccaccatactcctttctcatacaaactctctgccaacccacccaagatatt 45164952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 6336039 - 6335822
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    |||||||||||||||| |||||||  |||||||| |||||||||| ||||||||||||||||||||||||| |  |||||||| ||||||||||||||||    
T  6336039 ccatccctaatcctacgaacctccgtccaccaaatagaaccactctggcccccatcctccaacctcccatcgcgcacaccatacctagcaaccaacaccc 6335940  T
Q  111 tataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccata 210  Q
     |||||| |||||||  | ||| || | |||| | |||||||| || || ||||| |||||||| ||||||| ||||  || ||||||||| || || ||    
T  6335939 gataccataaccctcctctatctactaataatcttcaacaccatttacccaacaatgcctcattgaactcccgcaactgcctaactcctaaccccccgta 6335840  T
Q  211 ctcctttctcatacaaac 228  Q
    ||||||| ||| ||||||    
T  6335839 ctcctttttcaaacaaac 6335822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 39931205 - 39931122
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaa 120  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||   |||||||| ||||| |||||||||||| |||||||    
T  39931205 ccaccaacaagaacaactccggcccccatcctccaaccgcccatcctccacaccatacctagccaccaacaccctacaccacaa 39931122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 17504177 - 17504123
Alignment:
Q  28 aacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatcc 82  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  17504177 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcc 17504123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 17549037 - 17549091
Alignment:
Q  28 aacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatcc 82  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  17549037 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcc 17549091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 25018928 - 25018847
Alignment:
Q  36 gccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacca 117  Q
    |||||||| |||||||||| || |||||| |||||||||||||| ||    |||||||||| || |||||||||||||||||    
T  25018928 gccaccaagaagaaccacttcgacccccaacctccaacctcccagcctcctcaccatatcttgccaccaacaccctatacca 25018847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 18767921 - 18767981
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||| |||||| ||||||| |||||| |||||||||||||  ||||||||||||||    
T  18767921 aatcctacctacctcccgccaccacaaagaaacactccggccccccacctccaacctccca 18767981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 45993081 - 45993148
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||||||||||| || |||||| |||||||| |||||| ||||||| ||||| ||||||||||||||    
T  45993081 ccatccctaatcctccccacctcccgccaccaagaagaacaactccgg-ccccaacctccaacctccca 45993148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 17056052 - 17056142
Alignment:
Q  29 acctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccaca 119  Q
    ||||||| ||||||  ||||| |||||||||||||| || ||||||||||||||    ||||||| |  || |||||||||||||||||||    
T  17056052 acctccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacgcgccaccaacaccctataccaca 17056142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 33795974 - 33795924
Alignment:
Q  29 acctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||| |||||||  |||||||||||||||||||| ||||||||||||||    
T  33795974 acctcccgccaccacgaagaaccactccggcccccaccctccaacctccca 33795924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 34104003 - 34104048
Alignment:
Q  32 tcctgccaccaaaaagaaccactccggcccccatcctccaacctcc 77  Q
    |||| ||||||| |||||||||||| ||||||||||||||||||||    
T  34104003 tccttccaccaacaagaaccactccagcccccatcctccaacctcc 34104048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 18671683 - 18671743
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||| |||||| |||||||  ||||| |||||||||||||  ||||||||||||||    
T  18671683 aatcctacctacctcccgccaccatgaagaaacactccggccccccacctccaacctccca 18671743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 19545016 - 19544972
Alignment:
Q  32 tcctgccaccaaaaagaaccactccggcccccatcctccaacctc 76  Q
    |||| |||||| ||||||||||||||||||||| |||||||||||    
T  19545016 tccttccaccacaaagaaccactccggcccccaacctccaacctc 19544972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 39931070 - 39931014
Alignment:
Q  172 attaaactccctcaacctccgaactcctaaacctccatactcctttctcatacaaac 228  Q
    ||||| |||||||||||||| ||| || || ||||||||||||||||||| ||||||    
T  39931070 attaagctccctcaacctcctaacccccaaccctccatactcctttctcaaacaaac 39931014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 13553819 - 13553752
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccc 78  Q
    ||||| |||||||| || ||||||  |||||||  ||||| ||||||||||||| |||||||||||||    
T  13553819 ccatctctaatcctccccacctccctccaccaatgagaacaactccggcccccaacctccaacctccc 13553752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 34457784 - 34457725
Alignment:
Q  20 atcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| || |||||| ||||||| |||||| |||||||||||||  ||||||||||||||    
T  34457784 atcctgcctacctcccgccaccacaaagaaacactccggccccccacctccaacctccca 34457725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 22819334 - 22819244
Alignment:
Q  29 acctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccaca 119  Q
    ||||||| |||||| |||||| |||||||||||||| || |||||||||  |||    ||||||| |  || |||||||||||||||||||    
T  22819334 acctccttccaccacaaagaaacactccggcccccaaccgccaacctcctgtcctcctcaccataacgcgctaccaacaccctataccaca 22819244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 12308734 - 12308690
Alignment:
Q  27 caacctcctgccaccaaaaagaaccactccggcccccatcctcca 71  Q
    ||||||||  ||||||| |||||||||||||||||||| ||||||    
T  12308734 caacctccctccaccaataagaaccactccggcccccaacctcca 12308690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 17721174 - 17721238
Alignment:
Q  45 aagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacacc 109  Q
    |||||| ||||||||||||||||||||| |  ||||||   |||||||| ||||| |||||||||    
T  17721174 aagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccaccaacacc 17721238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 19162822 - 19162570
Alignment:
Q  1 ctcaccctctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagca 100  Q
    ||||||||| || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19162822 ctcaccctccccttccccaatcctaccaacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccgtccctaacaccatatctagca 19162723  T
Q  101 accaacaccctataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactccta 200  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  19162722 accaacaccctataccacaaccctccacgatcaacaagtaatctccatcaccacttccctaacaacgcctcattaaactccctcaaccgcctaactccta 19162623  T
Q  201 aacctccatactcctttctcatacaaactctatgccaacccacccaagatatt 253  Q
    |||| |||||||||||||||||||||||||| |||||||||||| ||||||||    
T  19162622 aaccaccatactcctttctcatacaaactctctgccaacccacctaagatatt 19162570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 40688577 - 40688813
Alignment:
Q  17 ctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacc 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  40688577 ctaatcctaccaacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctaccaaccaacacccgatacc 40688676  T
Q  117 acaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactcctt 216  Q
    |||||||||  | ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||| |||||||||||    
T  40688677 acaaccctcctcgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaactgcctaactcctaaaccaccatactcctt 40688776  T
Q  217 tctcatacaaactctatgccaacccacccaagatatt 253  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  40688777 tctcatacaaattctctgccaacccacccaagatatt 40688813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 7098987 - 7099204
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    |||||||||||| |  ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||    ||||||||||||| | ||| ||||    
T  7098987 ccatccctaatcttcacaacctccttccaccaaatagaaccactccggcccccatcctccaacctctcatcctcctcaccatatctagctatcaaaaccc 7099086  T
Q  111 tataccac-aaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccat 209  Q
     ||||||| |||||||  | |||||| |  ||  |||||||| |||| || |||||||||||||||||||||||||||  || ||| || ||||||||||    
T  7099087 gataccacaaaccctc-tcgatcaactaacaaactccaacacaactttcccaacaacgcctcattaaactccctcaactgcctaacacccaaacctccat 7099185  T
Q  210 actcctttctcatacaaac 228  Q
    ||||||||  |||||||||    
T  7099186 actcctttagcatacaaac 7099204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 54685115 - 54685290
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    |||||||||||||||| | ||||   |||||||| |||||||||| ||||||||||||||||||||||||| |  |||||||| |||||||||||||||     
T  54685115 ccatccctaatcctacgatcctctgtccaccaaatagaaccactctggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacct 54685214  T
Q  111 tataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaa 186  Q
     |||||| |||||||  | |||||| | |||| |||||||||| ||||| ||||| |||||||| ||||| |||||    
T  54685215 gataccataaccctcttctatcaactaataatctccaacaccatttccccaacaatgcctcattgaactctctcaa 54685290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 38296345 - 38296414
Alignment:
Q  145 ccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactcc 214  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  38296345 ccaacaccatttccctaataacgcctcattaaactccctcaacctccgcactcccaaaccaccatactcc 38296414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 8935579 - 8935647
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||||||||||| || |||||| |||||||| |||||| ||||||||||||||||||||||||||||    
T  8935579 ccatccctaatcctccccacctcccgccaccaagaagaacaactccggcccccatcctccaacctccca 8935647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 29553375 - 29553307
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||||||   | ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  29553375 ccatccctaatctgcctaacctcccgccaccacaaagaaccactccggcccccatcctccaacctccca 29553307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 19114932 - 19115009
Alignment:
Q  2 tcaccctctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| || |||||||||||||| || |||||| |||||||| |||||| |||| |||||||| ||||||||||||||    
T  19114932 tcaccgtccccatccctaatcctccctacctcccgccaccaagaagaacaactctggcccccaacctccaacctccca 19115009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 214
Target Start/End: Complemental strand, 55725315 - 55725138
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccctcaacaatcaaca 136  Q
    ||||||| |||||| ||||||||||||||||||||| |  ||||||   |||||||| ||||| ||||||||||||||||| || ||    | ||| ||     
T  55725315 ccaccaagaagaacaactccggcccccatcctccaaaccaccatcctccacaccatacctagccaccaacaccctataccataatccatctctatctact 55725216  T
Q  137 agtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactcc 214  Q
    |  ||  |||||||||| ||||||||||| ||    |||||||| |||||||||| ||| || || ||||||||||||    
T  55725215 aacaacctccaacaccatttccctaacaaagcaaagttaaactctctcaacctcctaacacccaaccctccatactcc 55725138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 23657802 - 23657870
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||||||||||| |  |||||| |||||||| |||||| ||| ||||||||||||||||||||||||    
T  23657802 ccatccctaatcctcctcacctcccgccaccaagaagaacaacttcggcccccatcctccaacctccca 23657870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 49925902 - 49925834
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||||||||| | || |||||| |||||||| |||||| ||||||||||||| ||||||||||||||    
T  49925902 ccatccctaatcttccccacctcccgccaccaagaagaacaactccggcccccaacctccaacctccca 49925834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 4524253 - 4524194
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccc 78  Q
    |||||| || ||||||||||||||| |||||| ||||||||||||| |||||||||||||    
T  4524253 aatcctccctacctcctgccaccaagaagaacaactccggcccccaacctccaacctccc 4524194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 214
Target Start/End: Complemental strand, 5789707 - 5789524
Alignment:
Q  31 ctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccctcaacaa 130  Q
    |||| |||||||| |||||| ||||||||||||||||||||| |  ||| ||   |||||||| ||||| || |||||| ||  ||||||||||  ||      
T  5789707 ctcccgccaccaagaagaacaactccggcccccatcctccaaacctccaccctccacaccatacctagccactaacaccttacgccacaacccttcactc 5789608  T
Q  131 tcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactcc 214  Q
    || || |  ||  ||||||||||||| || ||||| |   ||||||||||||||||||||| | |||| || ||| ||||||||    
T  5789607 tctactaacaacctccaacaccactttcccaacaaagtgacattaaactccctcaacctcctatctcccaacccttcatactcc 5789524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 19648214 - 19648273
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctcc 70  Q
    |||||||||||||| || |||||| |||||||| |||||| ||||||||||||| |||||    
T  19648214 ccatccctaatcctccccacctcccgccaccaagaagaacaactccggcccccaacctcc 19648273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 9690953 - 9691039
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccc 123  Q
    |||||||  |||| |||||||||||||| |||||||||||||| ||    ||||||||||||| || | |||||||||||| |||||    
T  9690953 ccaccaatgagaaacactccggcccccaacctccaacctcccagcctcctcaccatatctagctactagcaccctataccaaaaccc 9691039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 48312633 - 48312711
Alignment:
Q  45 aagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccc 123  Q
    |||||| ||||||||||||||||||||| |  ||||||   |||||||| ||||| ||||||||||||  |||||||||    
T  48312633 aagaacaactccggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacaccctacgccacaaccc 48312711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 48805501 - 48805554
Alignment:
Q  29 acctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatcc 82  Q
    ||||||| |||||| |||||||||||||||| ||||  ||||||||||||||||    
T  48805501 acctccttccaccacaaagaaccactccggcacccaatctccaacctcccatcc 48805554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 20396087 - 20396155
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| |||||||  || |||||| |||||||| |||||| |||||||||||||  |||||||||||||    
T  20396087 ccatctctaatccgccctacctcccgccaccaagaagaacaactccggcccccaaactccaacctccca 20396155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 46146202 - 46146294
Alignment:
Q  31 ctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccc 123  Q
    |||| |||||||| | |||| |||||||||||||| |||||| |  ||||||    ||||||||||||| ||||||||||||  |||||||||    
T  46146202 ctcccgccaccaagatgaacaactccggcccccattctccaaaccaccatccgctgcaccatatctagccaccaacaccctacgccacaaccc 46146294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 4551412 - 4551345
Alignment:
Q  50 ccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacca 117  Q
    ||||||| | |||||||||| |||||| |||||   |||||||| | |||||||||||||||||||||    
T  4551412 ccactccagtccccatcctctaacctctcatcctccacaccataacgagcaaccaacaccctatacca 4551345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 26694441 - 26694503
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatc 81  Q
    |||||| || |||||| ||||||| |||||| |||||| ||||||  ||||||||||||||||    
T  26694441 aatcctgcctacctcccgccaccacaaagaaacactccagccccccacctccaacctcccatc 26694503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 9777893 - 9777946
Alignment:
Q  29 acctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatcc 82  Q
    ||||||| |||||| |||||| |||||||||||||| ||  |||||||||||||    
T  9777893 acctccttccaccacaaagaaacactccggcccccaaccgtcaacctcccatcc 9777946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 11586833 - 11586720
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    ||||| ||||||||| | | ||||  ||||||| |||||| ||| |||||||||| |||||| |  ||||||   |||||||| ||||| || ||||||     
T  11586833 ccatctctaatcctaactatctccctccaccaagaagaacaacttcggcccccattctccaaacctccatccgccacaccatacctagccactaacacct 11586734  T
Q  111 tataccacaaccct 124  Q
    || |||||||||||    
T  11586733 tacaccacaaccct 11586720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 42778769 - 42778810
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctccc 78  Q
    ||||||| |||||| ||||||||||||| |||||||||||||    
T  42778769 ccaccaagaagaacaactccggcccccaacctccaacctccc 42778810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 10562968 - 10562900
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| |||||||  || ||||||  ||||||| |||||| |||| |||||||| ||||||||||||||    
T  10562968 ccatctctaatccgccctacctccctccaccaagaagaacaactctggcccccaacctccaacctccca 10562900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 29328278 - 29328238
Alignment:
Q  145 ccaacaccacttccctaacaacgcctcattaaactccctca 185  Q
    |||||||||||| ||||||||||| | ||||||||||||||    
T  29328278 ccaacaccactttcctaacaacgcatgattaaactccctca 29328238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 36256275 - 36256523
Alignment:
Q  3 caccctctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaac 102  Q
    ||||||| || || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36256275 caccctccccttctctaatcctaccaacctctttccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctaacaac 36256374  T
Q  103 caacaccctataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaa 202  Q
    ||||||||||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||  || ||||||||||    
T  36256375 caacaccctataccacaaccctccacgatcaacaagtaatctccaacatcacttccctaacaacgcctcattaaactctctcaactgcctaactcctaaa 36256474  T
Q  203 cctccatactcctttctcatacaaactctatgccaacccacccaagatatt 253  Q
    || |||||||| ||||||| ||||||||  |||||||||||||||||||||    
T  36256475 ccaccatactcatttctcagacaaactc--tgccaacccacccaagatatt 36256523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 4297944 - 4297741
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    |||||||||||  || ||| | | ||||||||| ||||||| |||||| ||||| || ||||||||||||||    ||||||| || || ||||||||||    
T  4297944 ccatccctaatattagcaatcgcgtgccaccaagaagaacctctccgggccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccc 4297845  T
Q  111 tataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccata 210  Q
    ||||||| || |  |  |  ||||| |  ||   ||||||||| || ||||| |||||  |||||||||||| ||||||||| || || |||||||||||    
T  4297844 tataccataaactactcctctcaaccaacaaatgccaacaccatttgcctaataacgcaacattaaactcccgcaacctccgcacccccaaacctccata 4297745  T
Q  211 ctcc 214  Q
    ||||    
T  4297744 ctcc 4297741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 41590601 - 41590804
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    |||||||||||  || ||| | | ||||||||| ||||||| |||||||||||| || ||||||||||||||    ||||||| || || ||||||||||    
T  41590601 ccatccctaatattagcaatcgcatgccaccaagaagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccc 41590700  T
Q  111 tataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccata 210  Q
    ||||||| ||    |  |  ||||| |  ||   ||||||||| || ||||| |||||  |||||||||||| ||||||||| || || |||||||||||    
T  41590701 tataccataaagtactcctctcaaccaacaaacgccaacaccatttgcctaataacgcaacattaaactcccgcaacctccgcacccccaaacctccata 41590800  T
Q  211 ctcc 214  Q
    ||||    
T  41590801 ctcc 41590804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 22094885 - 22094817
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||||| || || |||||| |||||||  |||||| ||| ||||||||||||||||||||||||    
T  22094885 ccatccctaattctccccacctcccgccaccacgaagaacaacttcggcccccatcctccaacctccca 22094817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 26263040 - 26262962
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatac 115  Q
    |||||||||||| ||||||||||||||| || ||||||| ||||||    ||||||| | |||||| ||||||||||||    
T  26263040 ccaccaaaaagacccactccggcccccacccaccaaccttccatcctcctcaccataacgagcaactaacaccctatac 26262962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 31642036 - 31642114
Alignment:
Q  31 ctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacacc 109  Q
    |||| |||||||  |||||| ||||||||||||||||||||| |  ||||||   |||||||||||||| |||||||||    
T  31642036 ctcccgccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatatctagccaccaacacc 31642114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 42039314 - 42039228
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccc 123  Q
    ||||||| || || |||||||||||||||||||||||| |||| ||    |||||||| | || ||||||||||||||||| |||||    
T  42039314 ccaccaagaaaaagcactccggcccccatcctccaaccgcccaaccacctcaccatatttcgccaccaacaccctataccaaaaccc 42039228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 27325285 - 27325338
Alignment:
Q  27 caacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccat 80  Q
    ||||||||  |||||| |||||||| |||||| |||||||||||||||||||||    
T  27325285 caacctccctccaccacaaagaacccctccggtccccatcctccaacctcccat 27325338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 15862312 - 15862200
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    ||||| ||||||||| | ||||||  ||||||| | |||| |||||  |||||| ||||||||| |||| ||    ||||||| ||||||| ||||||||    
T  15862312 ccatctctaatcctagccacctccctccaccaatacgaacaactccatcccccaacctccaaccgcccagcctcttcaccatacctagcaatcaacaccc 15862213  T
Q  111 tataccacaaccc 123  Q
    ||||||| |||||    
T  15862212 tataccaaaaccc 15862200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 19513108 - 19513032
Alignment:
Q  3 caccctctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||| ||||| | |||||| || ||||||  ||||||| |||||| ||||||||||||  ||||||||||||||    
T  19513108 caccctccccatctcgaatcctccctacctccctccaccaagaagaacaactccggccccccacctccaacctccca 19513032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 33170163 - 33170275
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    ||||||||||||||  | | |||| |||||||| | |||| ||||||||||||||||||||| |  ||||||    ||||||| ||||| || |||||||    
T  33170163 ccatccctaatcctcactatctcccgccaccaagatgaacaactccggcccccatcctccaaaccaccatccgccgcaccatacctagccactaacaccc 33170262  T
Q  111 tataccacaaccc 123  Q
    ||  |||||||||    
T  33170263 tacgccacaaccc 33170275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 38357980 - 38358040
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||| |||||| ||||||| || ||| |||||||||||||  ||||||||||||||    
T  38357980 aatcctacctacctcccgccaccacaaggaaacactccggccccccacctccaacctccca 38358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 380434 - 380473
Alignment:
Q  39 accaaaaagaaccactccggcccccatcctccaacctccc 78  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  380434 accaagaagaaccactccggcccccaacctccaacctccc 380473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 30731787 - 30731736
Alignment:
Q  173 ttaaactccctcaacctccgaactcctaaacctccatactcctttctcatac 224  Q
    ||||||||||||||||||  |||||| || |||||||||||||| |||||||    
T  30731787 ttaaactccctcaacctcttaactcccaaccctccatactccttcctcatac 30731736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 18896145 - 18896211
Alignment:
Q  102 ccaacaccctataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgc 168  Q
    |||||| |||||||||||||||||  | |||||| |  ||| ||||||||||||| |||||||||||    
T  18896145 ccaacatcctataccacaaccctcctctatcaaccaacaatctccaacaccacttacctaacaacgc 18896211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 20208328 - 20208286
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||| |||| ||||||||||||| ||||||||||||||    
T  20208328 ccaccaaaacgaacaactccggcccccaacctccaacctccca 20208286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 21077708 - 21077762
Alignment:
Q  160 taacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactcc 214  Q
    ||||||||| ||||||||| ||||||||||||| || || || ||||||||||||    
T  21077708 taacaacgcatcattaaaccccctcaacctccgcacccccaaccctccatactcc 21077762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 42514225 - 42514323
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacacc 109  Q
    ||||| ||||||||  ||| ||||  ||||||  |||||| ||||||||||||||||||||| || ||||||   |||||||| ||||| || ||||||    
T  42514225 ccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaactgccatcctccacaccatacctagccactaacacc 42514323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 6866860 - 6866937
Alignment:
Q  2 tcaccctctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| || ||||| | ||||||| | |||||| |||||||  ||||||||||| |||||||  ||||||||||||||    
T  6866860 tcaccgtcaccatcacgaatcctatctacctcccgccaccacgaagaaccactctggccccccacctccaacctccca 6866937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 214
Target Start/End: Complemental strand, 8299791 - 8299614
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccctcaacaatcaaca 136  Q
    |||||| ||||||| ||||||||||||||||||||| |  ||||||   || ||||| ||||| | ||||||||||  |||||| ||||  | ||||||     
T  8299791 ccaccacaaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaacaacaccctactccacaaacctcccctatcaact 8299692  T
Q  137 agtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactcc 214  Q
    |  |   |||||||||| ||||| ||||| ||    |||||||| | |||||||| ||| || || ||||||||||||    
T  8299691 aacagcctccaacaccatttccccaacaaagcaatgttaaactctcgcaacctcctaacacccaaccctccatactcc 8299614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 31864749 - 31864810
Alignment:
Q  14 tccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacct 75  Q
    ||||||||||| || |||||| |||||||| ||||||||||||| || ||| ||||| ||||    
T  31864749 tccctaatcctccccacctcccgccaccaagaagaaccactccgaccgccaacctcccacct 31864810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 34338415 - 34338456
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctccc 78  Q
    ||||||| ||||| |||||||||||||| |||||||||||||    
T  34338415 ccaccaagaagaaacactccggcccccaacctccaacctccc 34338456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 25857059 - 25856999
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctcca 71  Q
    ||||| ||||||||  ||| ||||  |||||| ||||||| ||||||||||||||||||||    
T  25857059 ccatctctaatcctcacaatctccctccaccacaaagaacaactccggcccccatcctcca 25856999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 28535276 - 28535212
Alignment:
Q  45 aagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacacc 109  Q
    |||||| ||||||||||||||||||||| |  ||||||   |||||||| ||||| |||||||||    
T  28535276 aagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccaccaacacc 28535212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 42928670 - 42928742
Alignment:
Q  45 aagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacca 117  Q
    |||||| ||||||||||||||||||||| |  ||||||   ||| |||| ||||| |||||||||||| ||||    
T  42928670 aagaacaactccggcccccatcctccaaacctccatccgccacatcatacctagccaccaacaccctacacca 42928742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 2207451 - 2207209
Alignment:
Q  17 ctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacc 116  Q
    |||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||| ||| ||||||||||||||||    
T  2207451 ctaatcctcccaacctccttccaccaaaaagaaccaccccggcccccatcctccaacctcccgttcctcacaccatatcgagcgaccaacaccctatacc 2207352  T
Q  117 acaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactcctt 216  Q
    ||||||||| ||  || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||  | ||||||||| || |||||||||||    
T  2207351 acaaccctccacggtccacaagtaatctccaacaccacttccctaacaacgcctcattaaactccctcaaccgtctaactcctaacccaccatactcctt 2207252  T
Q  217 tctcatacaaactctatgccaacccacccaagatattcttcga 259  Q
    |||| |||||||||  ||||||||||||||||| ||| |||||    
T  2207251 tctcttacaaactcgttgccaacccacccaagaaatttttcga 2207209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 13416182 - 13416418
Alignment:
Q  17 ctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacc 116  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |  |||||||| |||||||||||||||| |||||    
T  13416182 ctaatcctactaacctccttccaccaaatagaaccactccggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacccgatacc 13416281  T
Q  117 acaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactcctt 216  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || ||||||| |||    
T  13416282 acaaccctcaacgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaaccgcctaactcctaatccaccatacttctt 13416381  T
Q  217 tctcatacaaactctatgccaacccacccaagatatt 253  Q
    ||| | ||| || || ||||| | |||||||||||||    
T  13416382 tcttacacacacactctgccagctcacccaagatatt 13416418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 6727406 - 6727319
Alignment:
Q  18 taatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaa 105  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| |  |||||||| |||||||||||    
T  6727406 taatcctaccaatctccttccaccaaatagaaccactccggcccccatcctccaacctcccatcacgtacaccatacctagcaaccaa 6727319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 43310789 - 43310945
Alignment:
Q  36 gccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccctcaacaatcaac 135  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||    | |||||||| || |||||||||||||||||||| |  |  |  || ||    
T  43310789 gccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctataccacaaactactcctctccac 43310888  T
Q  136 aagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccg 192  Q
     | |||   ||||||||| || |||||||||||  ||||||||||||||||||||||    
T  43310889 caataaacgccaacaccatttgcctaacaacgcaacattaaactccctcaacctccg 43310945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 26146745 - 26146917
Alignment:
Q  36 gccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccctcaacaatcaac 135  Q
    |||||||| || ||||||||||||||||| |||||||||||||||||    | |||||||| || |||||||||||||||||||| |  |  |  || ||    
T  26146745 gccaccaagaataaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctataccacaaactactcctctccac 26146844  T
Q  136 aagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctcca 208  Q
     |  ||   ||||||||| || |||||||||||  |||||||||||||||| ||||| || || |||||||||    
T  26146845 caacaaacgccaacaccatttgcctaacaacgcaacattaaactccctcaaactccgcacacccaaacctcca 26146917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 15018173 - 15018250
Alignment:
Q  2 tcaccctctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| || |||||||||||||| || |||||| |||||||| |||||| ||| ||||||||| ||||||||||||||    
T  15018173 tcaccgtccccatccctaatcctccctacctcccgccaccaagaagaacaacttcggcccccaacctccaacctccca 15018250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 10689087 - 10689246
Alignment:
Q  38 caccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccctcaacaatcaacaa 137  Q
    |||||| |||||||||||||||||| | |||||||||||| | ||  | ||||||||||  | ||||||||||||||||| || |  |  |  || || |    
T  10689087 caccaagaagaaccactccggccccaa-cctccaacctcctagcctcatcaccatatctcaccaccaacaccctataccataaactactcctctccacca 10689185  T
Q  138 gtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcc 198  Q
     |||   |||||||||||| |||||||||||  ||||||||||||||||||||||| ||||    
T  10689186 ataaacgccaacaccactttcctaacaacgcaacattaaactccctcaacctccgacctcc 10689246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 28400177 - 28400117
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||| |||||| ||||||| |||||| |||||||||||||  ||||||||||||||    
T  28400177 aatcctacctacctcccgccaccacaaagaaacactccggccccccacctccaacctccca 28400117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 9668641 - 9668574
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccc 78  Q
    ||||| |||||||| || ||||||  ||||||| |||||| ||||||||||||| |||||||||||||    
T  9668641 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccc 9668574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 44028722 - 44028648
Alignment:
Q  144 tccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactcctttc 218  Q
    |||| |||||||| |||| ||||||||||||||||||| |||||   | ||| || |||||||||||||||||||    
T  44028722 tccagcaccacttacctagcaacgcctcattaaactccttcaactgtctaacacccaaacctccatactcctttc 44028648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 3251258 - 3251314
Alignment:
Q  145 ccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaa 201  Q
    |||||||||||||||||| || ||  ||||||| ||||| |||||||||||||||||    
T  3251258 ccaacaccacttccctaaaaaagcaacattaaattcccttaacctccgaactcctaa 3251314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 35488350 - 35488410
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||| |||||| |||||||  |||||||||| ||||||||  ||||||||||||||    
T  35488350 aatcctacctacctcccgccaccacgaagaaccacttcggccccccacctccaacctccca 35488410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 22725058 - 22725007
Alignment:
Q  27 caacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccc 78  Q
    |||||| | |||||||  |||||| |||||||||||||||||||||||||||    
T  22725058 caaccttccgccaccacgaagaacaactccggcccccatcctccaacctccc 22725007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 37445632 - 37445699
Alignment:
Q  45 aagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacacccta 112  Q
    |||||| ||||||||||||||||||||||||||  |||    ||||||| ||||| ||||||||||||    
T  37445632 aagaacaactccggcccccatcctccaacctcctgtcctccgcaccatacctagccaccaacacccta 37445699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 21829380 - 21829338
Alignment:
Q  149 caccacttccctaacaacgcctcattaaactccctcaacctcc 191  Q
    ||||||||||||||||||||  ||||||| |||||||||||||    
T  21829380 caccacttccctaacaacgctacattaaattccctcaacctcc 21829338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 1380613 - 1380654
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctccc 78  Q
    ||||||| |||||| ||||||||||||| |||||||||||||    
T  1380613 ccaccaagaagaacaactccggcccccaacctccaacctccc 1380654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 11234114 - 11234049
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctc 76  Q
    ||||| |||||||| || ||||||   |||||| |||||| ||||||||||||| |||||||||||    
T  11234114 ccatctctaatcctccctacctcccttcaccaataagaacaactccggcccccaacctccaacctc 11234049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 14440249 - 14440358
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    ||||| ||||||||| | | ||||  ||||||  |||||| ||||||||||||||||||||| |  ||||||   | |||||| ||||| | ||||||||    
T  14440249 ccatctctaatcctagctatctccctccaccacgaagaacaactccggcccccatcctccaaaccaccatccgccataccatacctagccaacaacaccc 14440348  T
Q  111 tataccacaa 120  Q
    || |||||||    
T  14440349 tacaccacaa 14440358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 11196856 - 11196924
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||||||||| || | || ||| |||||||| | ||| |||||||||||||| ||||||||| ||||    
T  11196856 ccatccctaatcttagctacttcccgccaccaagatgaaacactccggcccccaacctccaaccgccca 11196924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 32191609 - 32191637
Alignment:
Q  50 ccactccggcccccatcctccaacctccc 78  Q
    |||||||||||||||||||||||||||||    
T  32191609 ccactccggcccccatcctccaacctccc 32191637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 4310485 - 4310302
Alignment:
Q  3 caccctctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaac 102  Q
    ||||||| || || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4310485 caccctccccttctctaatcctaccaacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacatcatatctagcaac 4310386  T
Q  103 caacaccctataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaa 186  Q
    ||||||||||||||||||||||| || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  4310385 caacaccctataccacaaccctccacgatcaacaagtaacctccaacaccacttccctaacaacgcctcattaaactccctcaa 4310302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 36492886 - 36493089
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    |||||||||||  || ||| | | ||||||||| ||||||| |||||||||||| || ||||||||||||||    ||||||| || || ||||||||||    
T  36492886 ccatccctaatattagcaatcgcgtgccaccaagaagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccc 36492985  T
Q  111 tataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccata 210  Q
    ||||||| || |  |  |  ||||| |  ||   ||||||||| || ||||| |||||  |||||||||||| ||||||||| || || |||||||||||    
T  36492986 tataccataaactactcctctcaaccaacaaacgccaacaccatttgcctaataacgcaacattaaactcccgcaacctccgcacccccaaacctccata 36493085  T
Q  211 ctcc 214  Q
    ||||    
T  36493086 ctcc 36493089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 38046897 - 38046975
Alignment:
Q  45 aagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccc 123  Q
    |||||| ||| |||||||||||||||||||||||||||   |||||||| |||||||||||  | ||||||||||||||    
T  38046897 aagaacaacttcggcccccatcctccaacctcccatcctccacaccatacctagcaaccaatgctctataccacaaccc 38046975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 12134841 - 12134898
Alignment:
Q  20 atcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcc 77  Q
    ||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  12134841 atcctccctacctcctgccaccataaagaaccactccggcccccaacctccaacctcc 12134898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 6901422 - 6901482
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||| || || |||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  6901422 aatcctccctacttcctgccaccaagaagaaccacttcggcccccaacctccaacctccca 6901482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 20824804 - 20825007
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    ||||| ||||||||  ||| ||||  |||||| ||||||| ||||||||||||||||||||| |  ||||||   || ||||| ||||| | ||||||||    
T  20824804 ccatctctaatcctcacaatctccctccaccacaaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaacaacaccc 20824903  T
Q  111 tataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccata 210  Q
    ||  |||||| ||||  | |||||| |  |   |||||||||| ||||| ||||| ||    |||||||| |||||||||| ||| || || ||||||||    
T  20824904 tactccacaaacctcccctatcaactaacagcctccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccata 20825003  T
Q  211 ctcc 214  Q
    ||||    
T  20825004 ctcc 20825007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 17659339 - 17659404
Alignment:
Q  14 tccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||||  || ||||||  ||||||| |||||| ||||||||||||| ||||||||||||||    
T  17659339 tccctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccca 17659404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 36157659 - 36157727
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| ||||||||  | ||||||  ||||||| |||||| ||||||||||||| ||||||||||||||    
T  36157659 ccatctctaatcctcgccacctccctccaccaagaagaacaactccggcccccaacctccaacctccca 36157727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 44082639 - 44082579
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||| |||||| ||||||| |||||| ||||||| |||||  ||||||||||||||    
T  44082639 aatcctacctacctcccgccaccacaaagaaacactccgaccccccacctccaacctccca 44082579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 42649759 - 42649821
Alignment:
Q  46 agaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacac 108  Q
    ||||||||||||||||||||| | ||||||||| |||    ||||||||||||| ||||||||    
T  42649759 agaaccactccggcccccatctttcaacctcccgtcctcctcaccatatctagccaccaacac 42649821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 11393992 - 11393915
Alignment:
Q  2 tcaccctctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| |||||||| | |||||| || ||||||  ||||||| |||||| ||||||||||||   |||||||||||||    
T  11393992 tcaccatctccatctcgaatcctccctacctccctccaccaagaagaacaactccggccccccgactccaacctccca 11393915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 43249427 - 43249363
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctc 76  Q
    ||||| |||||||| || ||| ||| |||||||||||||| ||||||||||||| |||| ||||||    
T  43249427 ccatctctaatcctccccaccccct-ccaccaaaaagaacaactccggcccccaacctctaacctc 43249363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 9923140 - 9923204
Alignment:
Q  45 aagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacacc 109  Q
    |||||| ||||||||||||||||||||| |  ||||||   |||||||| ||||| |||||||||    
T  9923140 aagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccaccaacacc 9923204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 37165730 - 37165642
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccctc 125  Q
    |||||||  |||| |||||||||||||| ||||||||| |||||||    | |||||||| || ||||  |||||||||||||| ||||    
T  37165730 ccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcgccatatctcgccaccagtaccctataccacaagcctc 37165642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 8130463 - 8130697
Alignment:
Q  18 taatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacca 117  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| |  |||||||| |||||||||||||||||||||||    
T  8130463 taatcctactaacctccttccaccaaaaagaaccactccggcccccaacctccaacctcccatcacgcacaccatacctagcaaccaacaccctatacca 8130562  T
Q  118 caaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaa-cctccatactcctt 216  Q
    |||||||| || ||||||||||||  |||||||||||||||||| |||||||||||||||||||||||| | || |||||||||| || ||| |||||||    
T  8130563 caaccctccacgatcaacaagtaacctccaacaccacttccctagcaacgcctcattaaactccctcaatcgcctaactcctaaaccccccagactcctt 8130662  T
Q  217 tctcatacaaactctatgccaacccacccaagata 251  Q
    ||||| |||||| || ||||| | |||||||||||    
T  8130663 tctcaaacaaacactctgccagctcacccaagata 8130697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 52250734 - 52250653
Alignment:
Q  36 gccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacca 117  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||    |||||||||| || |||||||||||||||||    
T  52250734 gccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcaccatatctcgccaccaacaccctatacca 52250653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 16179452 - 16179662
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    ||||| ||||||||  ||| |||| |||||||| |||||| ||||||||||||||||||||| |  ||| |    |||||||| || || || ||||||     
T  16179452 ccatctctaatcctcacaatctcccgccaccaagaagaacaactccggcccccatcctccaaacctccaccgtctacaccatacctcgccactaacacct 16179551  T
Q  111 tataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccata 210  Q
    ||  ||||||||||  ||  || || |  ||  |||||||||| ||||| ||||| ||  ||||||||||||||||||||| |||||| || ||| ||||    
T  16179552 tacgccacaacccttcactctctactaacaacctccaacaccatttccccaacaaagcgacattaaactccctcaacctcctaactcccaacccttcata 16179651  T
Q  211 ctcctttctca 221  Q
    |||||| ||||    
T  16179652 ctccttcctca 16179662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 36709423 - 36709483
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||| |||||| ||||||| |||||| |||||||||||||  ||||||||||||||    
T  36709423 aatcctacctacctcccgccaccacaaagaaacactccggccccccacctccaacctccca 36709483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 45684689 - 45684749
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||| |||||| ||||||| |||||| |||||||||||||  ||||||||||||||    
T  45684689 aatcctacctacctcccgccaccacaaagaaacactccggccccccacctccaacctccca 45684749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 48930266 - 48930337
Alignment:
Q  46 agaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacca 117  Q
    ||||||||||| ||||||| |||||||||||||||||    |||||||||| || ||||| |||||||||||    
T  48930266 agaaccactccagcccccaacctccaacctcccatcctcctcaccatatctcgccaccaaaaccctatacca 48930337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 52250626 - 52250579
Alignment:
Q  145 ccaacaccacttccctaacaacgcctcattaaactccctcaacctccg 192  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  52250626 ccaacaccatttccctaacaacgcaacattaaactccctcaacctccg 52250579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 21740150 - 21740090
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||| || ||||||  ||||||| |||||| ||||||||||||| ||||||||||||||    
T  21740150 aatcctcccgacctccctccaccaagaagaacaactccggcccccaacctccaacctccca 21740090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 30188429 - 30188500
Alignment:
Q  145 ccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactcctt 216  Q
    |||||||||||| |||||||||||  ||||||||||||||||| ||| ||| | ||| ||||| | ||||||    
T  30188429 ccaacaccactttcctaacaacgctacattaaactccctcaacttcctaacacataaccctccctcctcctt 30188500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 6825351 - 6825433
Alignment:
Q  35 tgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacca 117  Q
    ||||||| | ||||||| |||||||||||| || ||||||||||||||    ||||||| |  || |||||||||||||||||    
T  6825351 tgccaccgagaagaacctctccggcccccaaccgccaacctcccatcctcctcaccataccgcgccaccaacaccctatacca 6825433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 7164030 - 7164076
Alignment:
Q  36 gccaccaaaaagaaccactccggcccccatcctccaacctcccatcc 82  Q
    |||||||| ||||| |||||||||||||| |||| ||||||||||||    
T  7164030 gccaccaagaagaaacactccggcccccaacctctaacctcccatcc 7164076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 5342831 - 5342782
Alignment:
Q  27 caacctcctgccaccaaaaagaaccactccggcccccatcctccaacctc 76  Q
    ||||||||  ||||||  |||||||||||||||||| |||||||||||||    
T  5342831 caacctccctccaccacgaagaaccactccggcccctatcctccaacctc 5342782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 42675064 - 42675004
Alignment:
Q  20 atcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatc 81  Q
    ||||| || |||||| ||||||| ||||||  ||||||||||||| ||||||||||||||||    
T  42675064 atcctgcctacctcccgccaccacaaagaaatactccggccccca-cctccaacctcccatc 42675004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 48930365 - 48930434
Alignment:
Q  145 ccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactcc 214  Q
    ||||||||| || |||||||| ||   ||||||||||||||||||||| || || ||||||||| |||||    
T  48930365 ccaacaccatttacctaacaatgcaatattaaactccctcaacctccgcacccccaaacctccaaactcc 48930434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14864092 - 14864032
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||| || ||||||  ||||||| |||||| ||||||||||||  ||||||||||||||    
T  14864092 aatcctccctacctccctccaccaagaagaacaactccggccccccacctccaacctccca 14864032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 24926315 - 24926255
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||| || |||||| ||||||||  ||||||||||||||  ||| ||||||||||||||    
T  24926315 aatcctccctacctccggccaccaagtagaaccactccggcgaccaacctccaacctccca 24926255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 43121302 - 43121238
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacct 75  Q
    ||||||||||||||  | ||||||  ||||||| |||||| ||||||||||||| ||||| ||||    
T  43121302 ccatccctaatcctcgccacctccctccaccaagaagaacaactccggcccccaacctcctacct 43121238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 15602829 - 15603035
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    |||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||||||| |  |||||||| |||||||||||||||     
T  15602829 ccatccctaatcctacgaacctccatccaccaaatagaaccactccggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacct 15602928  T
Q  111 tataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccata 210  Q
     |||||| |||||||  | |||||| | |||| ||| |||||| ||||| ||||| |||||||| ||||| | ||||  || ||||||||| || || ||    
T  15602929 gataccataaccctcttctatcaactaataatctccgacaccatttccccaacaatgcctcattgaactctcgcaactgcctaactcctaaccccccgta 15603028  T
Q  211 ctccttt 217  Q
    |||||||    
T  15603029 ctccttt 15603035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 503167 - 503099
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||||||||||| || |||||| |||||||| |||||| ||||||||||||||||||||||||||||    
T  503167 ccatccctaatcctccccacctcccgccaccaagaagaacaactccggcccccatcctccaacctccca 503099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 8264728 - 8264796
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||||||||||| || |||||| |||||||| |||||| ||||||||||||||||||||||||||||    
T  8264728 ccatccctaatcctccccacctcccgccaccaagaagaacaactccggcccccatcctccaacctccca 8264796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 19257407 - 19257465
Alignment:
Q  14 tccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaa 72  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  19257407 tccctaatcctaccaacctcctgccaccaacaagaatcactccggcccccaacctccaa 19257465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 13086044 - 13086111
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccc 78  Q
    ||||| |||||||| || ||||||| |||||||||||||| ||||||||||||| |||||||||||||    
T  13086044 ccatctctaatcctccctacctccttccaccaaaaagaacaactccggcccccaacctccaacctccc 13086111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 10362658 - 10362744
Alignment:
Q  31 ctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacca 117  Q
    |||| |||||||| |||||||||||||||||||  |||||||||||||||||    |||||||||| || ||||| |||||||||||    
T  10362658 ctcccgccaccaagaagaaccactccggccccccacctccaacctcccatcctcctcaccatatctcgccaccaaaaccctatacca 10362744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 5085670 - 5085593
Alignment:
Q  2 tcaccctctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| || |||| ||||||||| || |||||| |||||||| |||||| ||| ||||||||||||||||||||||||    
T  5085670 tcaccgtccccattcctaatcctccccacctcccgccaccaagaagaacaacttcggcccccatcctccaacctccca 5085593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 23065690 - 23065613
Alignment:
Q  2 tcaccctctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| || ||||| | ||||||||| ||||||||||||||  |||||||||||||||||||  ||||||||||||||    
T  23065690 tcaccatcaccatcacgaatcctacctacctcctgccaccacgaagaaccactccggccccccacctccaacctccca 23065613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 19256145 - 19256213
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||||||||||| || |||||| |||||||| |||||| |||| |||||||| ||||||||||||||    
T  19256145 ccatccctaatcctccccacctcccgccaccaagaagaacaactctggcccccaacctccaacctccca 19256213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 32186188 - 32186300
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    |||||||||||| |  | ||||||  ||||||| ||||| |||||||||||||| |||||||||||||| ||    ||| |||||| || ||||||||||    
T  32186188 ccatccctaatcttcactacctccctccaccaagaagaagcactccggcccccaacctccaacctcccagccacctcactatatctcgccaccaacaccc 32186287  T
Q  111 tataccacaaccc 123  Q
    ||||||| |||||    
T  32186288 tataccaaaaccc 32186300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 19350447 - 19350561
Alignment:
Q  9 ctccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacac 108  Q
    |||||||||||||| |  | ||||||| ||||||| | ||  |||||||||||||| |||||||||||||  ||    |||||||||| || ||||||||    
T  19350447 ctccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaacctccaacctccctgcctcctcaccatatctcgccaccaacac 19350546  T
Q  109 cctataccacaaccc 123  Q
    ||||||||| |||||    
T  19350547 cctataccaaaaccc 19350561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 18588870 - 18588966
Alignment:
Q  27 caacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccc 123  Q
    ||||||||| |||||| |||||||||   || |||||||||||||||||||| |||    ||||||||||||| |||||||| | |||||| |||||    
T  18588870 caacctcctcccaccataaagaaccaacacgacccccatcctccaacctcccgtcctcctcaccatatctagccaccaacactcgataccataaccc 18588966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 33640423 - 33640490
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||||||||||| || |||||| |||||||| |||||| ||||||| ||||| ||||||||||||||    
T  33640423 ccatccctaatcctccccacctcccgccaccaagaagaacaactccgg-ccccaacctccaacctccca 33640490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 7956289 - 7956200
Alignment:
Q  27 caacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacca 117  Q
    |||||| || |||||| ||||||||||||||| || |||||||||||||||| |||    ||||||||||||| |||||||| | ||||||    
T  7956289 caaccttcttccaccataaagaaccactccgg-cctcatcctccaacctcccgtcctcctcaccatatctagccaccaacactcgatacca 7956200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 29056042 - 29056132
Alignment:
Q  29 acctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccaca 119  Q
    ||||||| ||||||  ||||| |||||||||||||| || ||||||||||||||    ||||||| |  || |||||||||||||||||||    
T  29056042 acctccttccaccacgaagaaacactccggcccccaaccgccaacctcccatcctcctcaccataacgtgctaccaacaccctataccaca 29056132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 11060494 - 11060429
Alignment:
Q  14 tccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||||||||  || ||||||  ||||||| |||||| ||||||||||||| ||||||||||||||    
T  11060494 tccctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccca 11060429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 17078825 - 17078757
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| |||||||  || ||||||  ||||||| |||||| ||||||||||||| ||||||||||||||    
T  17078825 ccatctctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccca 17078757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 18051084 - 18051016
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| |||||||  || ||||||  ||||||| |||||| ||||||||||||| ||||||||||||||    
T  18051084 ccatctctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccca 18051016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 33805293 - 33805353
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||| || |||||| |||||||| |||||| ||||||||||||  ||||||||||||||    
T  33805293 aatcctccctacctcccgccaccaagaagaacaactccggccccccacctccaacctccca 33805353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 13938244 - 13938335
Alignment:
Q  31 ctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaacc 122  Q
    ||||||||||||| | |||| ||||||||||||||||||||| |  ||||||    ||||||| ||||| || |||||||||  ||||||||    
T  13938244 ctcctgccaccaagatgaacaactccggcccccatcctccaaaccaccatccgccgcaccatacctagccactaacaccctacgccacaacc 13938335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 26514255 - 26514341
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccc 123  Q
    |||||||| ||||||||||||||||||| ||||||| |||||  ||    ||||||| | ||| |||||||| |||||||| |||||    
T  26514255 ccaccaaatagaaccactccggcccccaacctccaaactccctgcctcctcaccataccgagccaccaacactctataccagaaccc 26514341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 26586839 - 26586885
Alignment:
Q  145 ccaacaccacttccctaacaacgcctcattaaactccctcaacctcc 191  Q
    ||||||||||||||||||||| ||  ||||||| |||||||||||||    
T  26586839 ccaacaccacttccctaacaatgcaacattaaattccctcaacctcc 26586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 18682189 - 18682148
Alignment:
Q  31 ctcctgccaccaaaaagaaccactccggcccccatcctccaa 72  Q
    |||| |||||||| |||||| |||||||||||||||||||||    
T  18682189 ctcccgccaccaagaagaacaactccggcccccatcctccaa 18682148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 10920023 - 10919987
Alignment:
Q  87 caccatatctagcaaccaacaccctataccacaaccc 123  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  10920023 caccatacctagcaaccaacaccctataccaaaaccc 10919987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 11469082 - 11469141
Alignment:
Q  19 aatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||| |||||||||  ||||||| |||||| |||||| ||||| |||||||||||||||    
T  11469082 aatcctcccaacctccctccaccaagaagaacaactccg-cccccttcctccaacctccca 11469141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 14372600 - 14372528
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacacc 109  Q
    ||||||| |||||| ||||||||||||||||||||| ||  | |||   |||||||| ||||| |||||||||    
T  14372600 ccaccaagaagaacaactccggcccccatcctccaaactttcgtccgccacaccatacctagccaccaacacc 14372528  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 25350755 - 25350839
Alignment:
Q  39 accaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccc 123  Q
    ||||||||||| |||||||||||||  || ||||||||||| ||    ||||||| |  || ||||||||||||||||| |||||    
T  25350755 accaaaaagaatcactccggccccctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccctataccagaaccc 25350839  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 25504629 - 25504561
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    |||||||||||| | ||||||||| |||||||| |||||| |||| |||||||| ||||||||||||||    
T  25504629 ccatccctaatcttcccaacctcccgccaccaagaagaacaactctggcccccaacctccaacctccca 25504561  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 39430915 - 39430988
Alignment:
Q  144 tccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactccttt 217  Q
    ||||||||||||| |||||||| ||   |||||||||||||||||||| ||| ||||| |||||| ||||||||    
T  39430915 tccaacaccacttacctaacaaagcacaattaaactccctcaacctcctaacccctaaccctccagactccttt 39430988  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 39430782 - 39430850
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| |||||||| || ||||||  ||||||| |||||| ||||||||||||| ||||||||||||||    
T  39430782 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccca 39430850  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 49264599 - 49264532
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccc 78  Q
    ||||| |||||||| || ||||||  ||||||| |||||| ||||||||||||| |||||||||||||    
T  49264599 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccc 49264532  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 22191399 - 22191309
Alignment:
Q  29 acctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccaca 119  Q
    ||||||| ||||||  ||||| |||||||||||||| || ||||||||||||||    ||||||| |  || |||||||||||||||||||    
T  22191399 acctccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacacgccaccaacaccctataccaca 22191309  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 20796173 - 20796238
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctc 76  Q
    ||||| |||||||| || ||||||  ||||||| |||||| ||||||||||||| |||||||||||    
T  20796173 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctc 20796238  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 43913986 - 43914042
Alignment:
Q  145 ccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaa 201  Q
    |||||||||||||||||| || ||  ||||||| ||||||||||||||||| |||||    
T  43913986 ccaacaccacttccctaataatgctgcattaaattccctcaacctccgaacacctaa 43914042  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 33260195 - 33260156
Alignment:
Q  144 tccaacaccacttccctaacaacgcctcattaaactccct 183  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  33260195 tccaacaccacttccctaacaacgccaaattaaactccct 33260156  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 33280354 - 33280315
Alignment:
Q  144 tccaacaccacttccctaacaacgcctcattaaactccct 183  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  33280354 tccaacaccacttccctaacaacgccaaattaaactccct 33280315  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 3074268 - 3074358
Alignment:
Q  29 acctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccaca 119  Q
    ||||||| ||||||  ||||| |||||||| ||||| || ||||||||||||||    ||||||| |  || |||||||||||||||||||    
T  3074268 acctccttccaccacgaagaaacactccggtccccaaccgccaacctcccatcctcctcaccataacgcgctaccaacaccctataccaca 3074358  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 5809086 - 5809168
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccata 93  Q
    |||||||||||| |  | || ||||||||| || | ||| |||||||||||||| |||||||||||||| || | ||||||||    
T  5809086 ccatccctaatcttcactacttcctgccactaagatgaaacactccggcccccaacctccaacctcccaaccttcacaccata 5809168  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 21405360 - 21405450
Alignment:
Q  29 acctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccaca 119  Q
    ||||||| ||||||  ||||| ||||| |||||||| || ||||||||||||||    ||||||| |  || |||||||||||||||||||    
T  21405360 acctccttccaccacgaagaaacactctggcccccaaccaccaacctcccatcctcctcaccataacgtgctaccaacaccctataccaca 21405450  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 45270783 - 45270817
Alignment:
Q  48 aaccactccggcccccatcctccaacctcccatcc 82  Q
    ||||||||||||||||| |||||||||||||||||    
T  45270783 aaccactccggcccccaacctccaacctcccatcc 45270817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 15174791 - 15174746
Alignment:
Q  145 ccaacaccacttccctaacaacgcctcattaaactccctcaacctc 190  Q
    ||||||||||||||||||||  ||  ||||||||||||||||||||    
T  15174791 ccaacaccacttccctaacagagcaacattaaactccctcaacctc 15174746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 20796295 - 20796368
Alignment:
Q  144 tccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctccatactccttt 217  Q
    |||||||||| || |||||||| ||   |||||||||||||||||||| ||| || || |||||| ||||||||    
T  20796295 tccaacaccatttacctaacaaagcaaaattaaactccctcaacctcctaacccccaatcctccagactccttt 20796368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 27393508 - 27393408
Alignment:
Q  87 caccatatctagcaaccaacaccctataccacaaccctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactccctcaa 186  Q
    ||||||| ||||||||||||||| ||||||| || ||||  | |||||| |  ||  ||||||||||||| |||||||| ||   ||||||||||| |||    
T  27393508 caccatacctagcaaccaacaccatataccataaacctcctctatcaaccaacaacctccaacaccactttcctaacaatgcaagattaaactcccgcaa 27393409  T
Q  187 c 187  Q
    |    
T  27393408 c 27393408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 47622686 - 47622614
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacacc 109  Q
    ||||||| |||||| ||||||||||| ||||||||| |  ||||||   |||||||| ||||| |||||||||    
T  47622686 ccaccaagaagaacaactccggcccctatcctccaaacctccatccaccacaccatacctagccaccaacacc 47622614  T

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Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 86836 - 86667
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccc 110  Q
    |||||||||||  |  ||||||||| |||||||  | |||||||| | |||||||||||||||||||||  |    |||||||||||||||||||||| |    
T  86836 ccatccctaattttcacaacctccttccaccaattacaaccactctgacccccatcctccaacctcccacactcctcaccatatctagcaaccaacactc 86737  T
Q  111 tataccaca-accctcaacaatcaacaagtaatatccaacaccacttccctaacaacgcctcattaaactc 180  Q
     |||||||| || |||  |  |||||||| ||| |||| || ||||| |||||||| ||||| ||||||||    
T  86736 gataccacatactctc-tctctcaacaagcaatctccatcatcactttcctaacaatgcctcgttaaactc 86667  T

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Target: scaffold0912 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 2508 - 2440
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| |||||||  || |||||| |||||||| |||||| ||||||||||||| ||||||||||||||    
T  2508 ccatctctaatccgccctacctcccgccaccaagaagaacaactccggcccccaacctccaacctccca 2440  T

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Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 67611 - 67699
Alignment:
Q  37 ccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctataccacaaccctc 125  Q
    ||||||| |||||||||||| ||||||| |||||||||||||  ||    ||||||| |||| || ||||||||||||||| |||||||    
T  67611 ccaccaagaagaaccactccagcccccaacctccaacctccctgcctcctcaccatacctagaaatcaacaccctataccaaaaccctc 67699  T

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Target: scaffold0061 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 55191 - 55273
Alignment:
Q  35 tgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacca 117  Q
    ||||||||| || || |||||||||||||| ||||||||||| |||||    | |||||||| || |||||||||||||||||    
T  55191 tgccaccaagaaaaatcactccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctatacca 55273  T

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Target: scaffold0017 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 143443 - 143361
Alignment:
Q  35 tgccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctagcaaccaacaccctatacca 117  Q
    ||||||||| || || |||||||||||||| ||||||||||| |||||    | |||||||| || |||||||||||||||||    
T  143443 tgccaccaagaaaaatcactccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctatacca 143361  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 182620 - 182688
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| |||||||  || |||||| |||||||| |||||| |||||||||||||  |||||||||||||    
T  182620 ccatctctaatccgccctacctcccgccaccaagaagaacaactccggcccccaaactccaacctccca 182688  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 28413 - 28476
Alignment:
Q  145 ccaacaccacttccctaacaacgcctcattaaactccctcaacctccgaactcctaaacctcca 208  Q
    ||||||||| || |||||||||||  ||||||||||||||||| |||| || || |||||||||    
T  28413 ccaacaccatttgcctaacaacgcagcattaaactccctcaacttccgcacacccaaacctcca 28476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 8037 - 8105
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| |||||||  || ||||||  ||||||| | |||| ||||||||||||| ||||||||||||||    
T  8037 ccatctctaatccgccccacctccctccaccaagacgaacaactccggcccccaacctccaacctccca 8105  T

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Target: scaffold0179; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 12971 - 13039
Alignment:
Q  11 ccatccctaatcctaccaacctcctgccaccaaaaagaaccactccggcccccatcctccaacctccca 79  Q
    ||||| |||||||  || ||||||  ||||||| | |||| ||||||||||||| ||||||||||||||    
T  12971 ccatctctaatccgccccacctccctccaccaagacgaacaactccggcccccaacctccaacctccca 13039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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