View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17049_low_27 (Length: 242)
Name: NF17049_low_27
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 10187788 - 10187579
Alignment:
| Q |
15 |
taattctaagaacaagagaaactgagaaacatacctttgtattttatcaataatggggttgtcaattctgtcaattatatccagcacgttatctactatc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
10187788 |
taattctaagaacaagagaaactgagaaacatacctttgtattttatcaataatggggttgtcaattctgtcaattatatcccgcacgtcatctactatc |
10187689 |
T |
|
| Q |
115 |
tgccaatttcattaaacatgtaaaataccaagccaataaaaggtgattcagaagatagacgaaaaattaactttctctaaccacgaccatggattagcgc |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10187688 |
tgccagtttcattaaacatgtaaaataccaagccaataaaaggtgattcagaagatagacgaaaaattaactttctctaaccacgaccatggattagcgc |
10187589 |
T |
|
| Q |
215 |
acagaacacc |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
10187588 |
acagaacacc |
10187579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 28933407 - 28933356
Alignment:
| Q |
112 |
atctgccaatttcattaaacatgtaaaataccaagccaataaaaggtgattc |
163 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
28933407 |
atctgccaatttcattagacatgtaaaataccaggccaataaaaggtgattc |
28933356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 35120543 - 35120731
Alignment:
| Q |
15 |
taattctaagaacaagagaaactgagaaacatacctttgtattttatcaataatggggttgtcaattctgtcaattatatccagcacgttatctactatc |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||| | |||||||||||||||| || | |||||| ||||| ||| || |||||| ||| |
|
|
| T |
35120543 |
taattctaagaacaagagaaactgagagacatactcctgtattttgttaataatggggttgtcacttgtttcaattctatcccgcaagtcatctaccatc |
35120642 |
T |
|
| Q |
115 |
tgccaatttcattaaacatgtaaaataccaagccaataaaaggtgattcagaagatagacgaaaaattaactttctctaaccacgacca |
203 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||||| | |||||||| ||| ||||| |
|
|
| T |
35120643 |
tgccaatttcattaaaaatgtaaaataccaagccaaaaaaaggtgattcagaagttagatgaaaaatatattttctctatccatgacca |
35120731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University