View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17049_low_28 (Length: 240)
Name: NF17049_low_28
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 84 - 224
Target Start/End: Original strand, 45389786 - 45389927
Alignment:
| Q |
84 |
gtacaatctttgatgtt-ctcaaatttgcaatttcacatgacgctgcaagcatttgggttctcatcactgaacatttgtggcgccggcgccggcggtgga |
182 |
Q |
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| T |
45389786 |
gtacaacctttgatgtttctcaaatttgcaatttcacatgacgctgcaagcatttgggttctcatcactgaacatttgtggcgccggcggcggtggtgga |
45389885 |
T |
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| Q |
183 |
gggtatgcttgatagtaagcagctgggtatgcaggatatcca |
224 |
Q |
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| T |
45389886 |
gggtatgcttgatagtaagcagctgggtatgcaggatatcca |
45389927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 45389633 - 45389718
Alignment:
| Q |
1 |
caattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatatgtagagtatactctaagttttgta |
86 |
Q |
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| T |
45389633 |
caattcccacttcaacagaaagtataccaatcttacaaaattgaaaattctatggtccatatgtagagtatactctaagttttgta |
45389718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 45385772 - 45385820
Alignment:
| Q |
115 |
ttcacatgacgctgcaagcatttgggttctcatcactgaacatttgtgg |
163 |
Q |
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| T |
45385772 |
ttcacatgacacagcaagcatttgggttctcatcactgaacatttgtgg |
45385820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 31890671 - 31890592
Alignment:
| Q |
2 |
aattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatatgtagagtatactctaagtt |
81 |
Q |
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| T |
31890671 |
aattcccacttcaacaaaaactatagaaattttacaaaactggaaattctaaggtccatatgtagagtatactcaaagtt |
31890592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 15601865 - 15601926
Alignment:
| Q |
1 |
caattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatat |
62 |
Q |
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| T |
15601865 |
caattcccacttcaacagaaagtatacaaatcttacaaaactgaaaattctaaggtccatat |
15601926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 15633177 - 15633238
Alignment:
| Q |
1 |
caattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatat |
62 |
Q |
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| T |
15633177 |
caattcccacttcaacagaaagtataaaaatcttacaaaactgaaaattctaaggtccatat |
15633238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 10970599 - 10970679
Alignment:
| Q |
1 |
caattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatatgtagagtatactctaagtt |
81 |
Q |
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| T |
10970599 |
caattcccagttcaacagaaagtatacaagtcttacaaaactgaaaattttatggtctatcagcggagtatactctaagtt |
10970679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 32449266 - 32449214
Alignment:
| Q |
29 |
aatcttacaaaattgaaaattatatggtccatatgtagagtatactctaagtt |
81 |
Q |
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| T |
32449266 |
aatcttacaaaattgaaaattcctaggtccatatgtagagtatgctctaagtt |
32449214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 41611236 - 41611316
Alignment:
| Q |
1 |
caattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatatgtagagtatactctaagtt |
81 |
Q |
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| T |
41611236 |
caattcccacttcaacataaaccatacaaatcttacaaaagtgaaaattctaaggtccatctgtagagtatattctaagtt |
41611316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 21269839 - 21269792
Alignment:
| Q |
116 |
tcacatgacgctgcaagcatttgggttctcatcactgaacatttgtgg |
163 |
Q |
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| T |
21269839 |
tcacatgacaatgcaagcatttggattctcatcactaaacatttgtgg |
21269792 |
T |
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