View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17049_low_3 (Length: 604)
Name: NF17049_low_3
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 2410780 - 2411125
Alignment:
| Q |
11 |
catcatcaggacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc |
110 |
Q |
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| T |
2410780 |
catcatcaggacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc |
2410879 |
T |
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| Q |
111 |
aattataggcaagaatcgattttctgacattattttgttaacaaaagaaaagtgttacagtaacacagtgttgtttttgttttggtgtttgtaacaacaa |
210 |
Q |
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| T |
2410880 |
aattataggcaagaatcgattttctgacattattttgttaaga--------gcgttacagtaacacagtgttgtttttgttttggtgtt-gtaacaacaa |
2410970 |
T |
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| Q |
211 |
gtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggctggtagtaagagaataaaagaaacggtattcaagggttc |
310 |
Q |
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| T |
2410971 |
gtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggctg---gtaagagaataaaagaaacggtattcaagggttc |
2411067 |
T |
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| Q |
311 |
ttttcgtcatttcgaggttgaaattgggcttgaggttggtctcgacccgagaccaaatg |
369 |
Q |
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| T |
2411068 |
ttttcgtcatttcga-gttcaaattgggcttgaggttggactcgacccgagaccaaatg |
2411125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 395 - 537
Target Start/End: Original strand, 2411123 - 2411261
Alignment:
| Q |
395 |
atgatttctttttacacttctcaatatctcttggaccccgaaattctgtttttatccataatatatacatacatagccgaagggtttgaaagttatcttc |
494 |
Q |
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| T |
2411123 |
atgatttctttttacacttctcaatatctcttggaccccgaaattctgtttttatctataatatatac----atagccgaagggtttgaaagttatcttc |
2411218 |
T |
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| Q |
495 |
ggaaaactgttttacccctaatgtatatgtatgatagatacat |
537 |
Q |
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| T |
2411219 |
ggaaaactgttttacccgtaatgtatatgtatgatagatacat |
2411261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 529 - 591
Target Start/End: Original strand, 2412488 - 2412550
Alignment:
| Q |
529 |
tagatacatcccaaaagtttcgggaattatctcccagagtggtgaaataattatcttcctttt |
591 |
Q |
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| T |
2412488 |
tagatacatcccaaaagtttcgggaattatcttctagagtggtgaaataattatcttcctttt |
2412550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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