View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17049_low_4 (Length: 573)
Name: NF17049_low_4
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 3427431 - 3427359
Alignment:
| Q |
39 |
tactccaaaatatgttattatagctctgtgttttgtatatttgaaattatctcctttcaaatgtctcattact |
111 |
Q |
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| T |
3427431 |
tactccaaaatatgttattatagctctgtgttttgtatatttgaaattatatccttccaaatgtctcattact |
3427359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 486
Target Start/End: Complemental strand, 26089870 - 26089750
Alignment:
| Q |
369 |
aattaaaatatttaatacattgaatcacaatagactaagattga---acagaaagataacaatgacaaggaaaattacaaatcgtcgttaacatcgatat |
465 |
Q |
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| T |
26089870 |
aatttaaatatttaatacattgaatcacaatttgctaagatttacggaaacaaagataacaatgacaatgaaaattacaaatcaacgttaaggtcgatat |
26089771 |
T |
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| Q |
466 |
tattggctatgaattcagcca |
486 |
Q |
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| T |
26089770 |
tattggttgtgaattcggcca |
26089750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 481
Target Start/End: Complemental strand, 30649529 - 30649419
Alignment:
| Q |
375 |
aatatttaatacattgaatcacaatagactaagattgaacagaaa----gataacaatgacaaggaaaattacaaatcgtcgttaacatcgatattattg |
470 |
Q |
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| T |
30649529 |
aatatttaacacattgattcactatttgctaaggttgaacagaaacaaagataacaatgacaagtaaaattacaaatcaacgttgagatcgatattattg |
30649430 |
T |
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| Q |
471 |
gctatgaattc |
481 |
Q |
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| T |
30649429 |
gttgtgaattc |
30649419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 6627034 - 6627002
Alignment:
| Q |
417 |
aaagataacaatgacaaggaaaattacaaatcg |
449 |
Q |
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| T |
6627034 |
aaagataacaatgacaaggaaaattacaaatcg |
6627002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 6627079 - 6627037
Alignment:
| Q |
356 |
aagatatgattaaaattaaaatatttaatacattgaatcacaa |
398 |
Q |
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| T |
6627079 |
aagatattattaaaattaaagaatttaatacattgaatcacaa |
6627037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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