View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17049_low_5 (Length: 506)
Name: NF17049_low_5
Description: NF17049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17049_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 46901728 - 46902219
Alignment:
| Q |
1 |
tctttaaataatgaaatcggatttatttaagtatacttgacttgtcattatttcttgttccaaaaagattaggattaattaaagttcttttaacttatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46901728 |
tctttaaataatgaaatcggatttatttaagtatacttgacttgtcattatttcttgttccaaaaagattaggattaattaatgttcttttaacttatgc |
46901827 |
T |
|
| Q |
101 |
aatcaatgaaatagtacacacctgttaacnnnnnnnattttaaatattaaataccatagttctgtttttgaaccactattaatttacaaatgatcaaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46901828 |
aatcaatgaaatagtacacacctgttaactttttttattttaaatattaaataccatagttctgtttttgaaccactattaatttacaaatgatcaaaat |
46901927 |
T |
|
| Q |
201 |
tgactttctttgtatacctcacctatgatacatacagtgccttttatttttctaataatacactttagacggagaactcaaatacacgctgaaaagttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46901928 |
tgactttctttgtatacctcacctatgatacatacagtgccttttatttttctaataatacactttagacggagaactcaaatacacgctgaaaagttca |
46902027 |
T |
|
| Q |
301 |
acaatttcgtcatcaagtgcgtgttacaattagaataataattgtaaagtttagaag-nnnnnnnnnnnnnnnnnnnnntggtacacaaattcacctaaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46902028 |
acaatttcgtcatcaagtgcgtgttacaattagaataataattgtaaagtttagaagaaaagaaaaaaaagatgaaaaatggtacacaaattcacctaaa |
46902127 |
T |
|
| Q |
400 |
ctaacatgttactgtaatttgaaattgtaatcattcgataaaaatttacagtataatcctagtccttttcaagataacatcgctgttattta |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46902128 |
ctaacatgttactgtaatttgaaattgtaatcattcgataaaaatttacaatataatcctagtccttttcaagataacatcgctgttattta |
46902219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University