View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_high_13 (Length: 395)
Name: NF1704_high_13
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 28 - 379
Target Start/End: Complemental strand, 43640767 - 43640416
Alignment:
| Q |
28 |
tataaattcgaaaaccattatgaaaaaccaacggtttgaatatatcatattattcggcaattttaattcatttgaacttttcctctaacaaaaaatttca |
127 |
Q |
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| T |
43640767 |
tataaattcgaaaaccattatgaaaagccaacggtttgaatatatcatatcattcggcaattttaattcatttgaacttttcctctaacaaaaaatttca |
43640668 |
T |
|
| Q |
128 |
tttgaactttttcttatagcaaaaagtgatgtatttaattgcatatatgtaactcccattcattaatgaaactctcaaacctttctcttcatcatcacca |
227 |
Q |
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| T |
43640667 |
tttgaactttttcttatagcaaaaagtgatgtatttaattgcatatatgtaactcccattcattaatgaaactctcaaacctttctcttcatcatcacca |
43640568 |
T |
|
| Q |
228 |
tggcgccaagcttaaccaccataaaagaaacaaatctttcccatgccaattccctccccaccataaaactagaaaactcaatattcctcgccaataacaa |
327 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43640567 |
tggctccaagcttaaccaccataaaagaaacaaatctttcccatgccaattccctccccaccataaaactagaaaactcaatattcctcgccaataacaa |
43640468 |
T |
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| Q |
328 |
cccaatcctcactcaagtcccatcaaacataaccattactccaccacctcat |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43640467 |
cccaatcctcactcaagtcccatcaaacataaccattactccaccacctcat |
43640416 |
T |
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