View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_high_15 (Length: 375)
Name: NF1704_high_15
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 33321310 - 33320970
Alignment:
| Q |
19 |
actcatcttgttcctgtcgaacgtcctcctggactcaatgatgttggcatggtagcctggttgatggatatgtgtacgcctgaattcccatctggaagga |
118 |
Q |
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| T |
33321310 |
actcctcttgtacctgtcgaacgtcctcctggactcaatgatgttggcatggtagcctggttgatggatatgtatacgcctgaattcccatctggaagga |
33321211 |
T |
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| Q |
119 |
caatattggttgtttcaaatgatgtgaccttcaaggccggttcttttggcccaggagaagatgcgtactttagagcagtaactgatcttgcctgtgcgaa |
218 |
Q |
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| T |
33321210 |
caatattggttgtttcgaatgatgtgaccttcaaggccggttcttttggcccaggagaagatgcgtactttagagcagtaactgatcttgcctgtgcgaa |
33321111 |
T |
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| Q |
219 |
gaaaatacctttaatttacttagcagcaagttctggtgcccggttaggtgtggcagaggaagtcaaagcttgtttcagagtcggttggtttgaggaatct |
318 |
Q |
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| T |
33321110 |
gaaaatacctttaatttacttagcagcaagttctggtgcccggttaggtgtggcagaggaagtcaaagcttgtttcagagtcggttggtttgaggaatct |
33321011 |
T |
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| Q |
319 |
aatcctgagcatggttttcgctatgtatatttaacacctga |
359 |
Q |
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| T |
33321010 |
aatcctgagcatggttttcgctatgtatatttaacacctga |
33320970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 47 - 359
Target Start/End: Complemental strand, 33346404 - 33346092
Alignment:
| Q |
47 |
ctggactcaatgatgttggcatggtagcctggttgatggatatgtgtacgcctgaattcccatctggaaggacaatattggttgtttcaaatgatgtgac |
146 |
Q |
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| T |
33346404 |
ctggactcaatgatgttggcatggtagcctggttgatggaaatgtgtacgcctgaattcccatctggaaggacaatattggttgtttcaaatgacgttac |
33346305 |
T |
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| Q |
147 |
cttcaaggccggttcttttggcccaggagaagatgcgtactttagagcagtaactgatcttgcctgtgcgaagaaaatacctttaatttacttagcagca |
246 |
Q |
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||||||||||||||||||||||||| |||| ||||| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
33346304 |
cttcaaggccggttcttttggcccaagagaggatgcattctttagagcagtaaccgatcttgcctgtgcaaagaaaatacctttaatttacttggcagca |
33346205 |
T |
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| Q |
247 |
agttctggtgcccggttaggtgtggcagaggaagtcaaagcttgtttcagagtcggttggtttgaggaatctaatcctgagcatggttttcgctatgtat |
346 |
Q |
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| T |
33346204 |
aattctggtgcccgtttaggtgttgccgaggaagtcaaagcttgtttcaaagttggttggtctgaggaatctaaacccgagcatggttttcagtatgtat |
33346105 |
T |
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| Q |
347 |
atttaacacctga |
359 |
Q |
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| T |
33346104 |
atttaacacctga |
33346092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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