View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_high_2 (Length: 559)
Name: NF1704_high_2
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 20 - 548
Target Start/End: Complemental strand, 37353176 - 37352645
Alignment:
| Q |
20 |
ccttagaactaaatcccaaacaaccaagcagaccttgtctataaggcaaaaacgtctttctcctcaactcttcagcttgagccctatttgctttatagtg |
119 |
Q |
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| T |
37353176 |
ccttagaactaaatcccaaacaaccaagcagaccttgtctataaggcaaaaacgtctttctcctcaactcttcagcttgagccctatttgctttatagtg |
37353077 |
T |
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| Q |
120 |
taactcatgtggagaaggtggaacacgtctcttcccaacaccattcataggttttcccgtcattttcttaccccaacttcctttactagaannnnnnnnn |
219 |
Q |
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| T |
37353076 |
taactcatgtggagaaggtggaacacgtctcttcccaacaccattcataggttttcccgtcattttcttaccccaacttcctttactagaagatgatgat |
37352977 |
T |
|
| Q |
220 |
nnnnnnnn---cccatttctttgtgtttcacaagttttctcctttgaaatctgggcttgtagattttgattatttgagctagatttcttgtcttttgttg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37352976 |
gatgatgatgacccatttctttgtgtttcacaagttttctcctttgaaatctgggcttgtagattttgattatttgagctagatttcttgtcttttgttg |
37352877 |
T |
|
| Q |
317 |
gagaaaatgaaatagttgaccaaaacttgttgttacttcttccttcacttttgcttctaagaaaatccttcaagaaaacccatcttttagagcttcttcc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37352876 |
gagaaaatgaaatagttgaccaaaacttgttgttacttcttccttcacttttgcttctaagaaaatccttcaagaaaacccatcttttagagcttcttcc |
37352777 |
T |
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| Q |
417 |
agctgaagaagatctagaagatgaagctgaatctaaaggtgttatctctattctttctaaacccatttcatcaactttaacattctccatttcagaacaa |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37352776 |
agctgaagaagatctagaagatgaagctgaatctaaaggtgttatctctattctttctaaacccatttcatcaaccttaacattctccatttcagaacaa |
37352677 |
T |
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| Q |
517 |
tcatttccattttcattatttttgttgttcat |
548 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37352676 |
tcatttccattttcattatttttgttgttcat |
37352645 |
T |
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