View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_high_28 (Length: 275)
Name: NF1704_high_28
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 1358129 - 1358385
Alignment:
| Q |
7 |
cttggttcaatcctccggctttacatacaatcttcatagtgcttctcagcaaaagcacgccccacattcaagaatttcaaacctaattaaaatcaattca |
106 |
Q |
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| T |
1358129 |
cttggttcaatcctccggctttacatacaatcttcatagtgcttctcagcaaaagcacgccccacattcaagaatttcaaacctaattaaaatcaattca |
1358228 |
T |
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| Q |
107 |
cacaactttcatattagatatctacgggaactataaacagctttcaaaactagaactttataatctttcattatttatcaattattattagtaattacta |
206 |
Q |
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| T |
1358229 |
cacaactttcatattaaatatctacgggaactataaacagctttcaaaactagaactttataatctttcattatttatca---attattagtaattacta |
1358325 |
T |
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| Q |
207 |
acatactaactaatcactgactatatggtttataataataattggtctttctttctctgc |
266 |
Q |
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| T |
1358326 |
acatactaactaatcactgactatatggtttataataataattggtctttctttctctgc |
1358385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 1368149 - 1368198
Alignment:
| Q |
41 |
catagtgcttctcagcaaaagcacgccccacattcaagaatttcaaacct |
90 |
Q |
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| T |
1368149 |
catagtgcttctcagcaaaagcacgctccacattcaagaatttcaaacct |
1368198 |
T |
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