View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_high_30 (Length: 271)
Name: NF1704_high_30
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 10277973 - 10278208
Alignment:
| Q |
20 |
tattatggtgaagctaaattcagtcttacgtgattctaaatataggagttatttgtgcagaaagctaaattatgcggaaaaatgataatgacgaattttg |
119 |
Q |
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| T |
10277973 |
tattatggtgaagctaaattcagtcttacgtgattctaaatataggagttatttgtgcagaaagctaaattatgcggaaaaatgataatgacgaattttg |
10278072 |
T |
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| Q |
120 |
gcgtatgttgttactagtattgattgaaaacgtcaccaaatgatgcaacttctcaactataatccacacataatttcaaacttcggtaccatacgaaaac |
219 |
Q |
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| T |
10278073 |
gcgtatgttgttgctagtattgattgaaaacctcaccaaatgatgcaacttctcaactataatccacac--aatttcaaacttcggtaacatacgaaaac |
10278170 |
T |
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| Q |
220 |
aaaatcacatgacaactat---tttatggtacaaaaat |
254 |
Q |
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| T |
10278171 |
aaaatcacatgacaactattgatttatggtacaaaaat |
10278208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 10253491 - 10253592
Alignment:
| Q |
128 |
tgttactagtattgattgaaaac-gtcaccaaatgatgcaacttctcaactataatccacacataatttcaaacttcggtaccatacgaaaacaaaatca |
226 |
Q |
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|||||||| ||||||||||||| || |||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||| |
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| T |
10253491 |
tgttactaatattgattgaaaaatgttaccaaatgatgcaacttcccaactccaatccactcataatttcaaacttcgctaccatatgaaaacaaaatca |
10253590 |
T |
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| Q |
227 |
ca |
228 |
Q |
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| T |
10253591 |
ca |
10253592 |
T |
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