View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1704_high_31 (Length: 268)
Name: NF1704_high_31
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_31 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 17)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 10863636 - 10863771
Alignment:
| Q |
11 |
cagagacggacccatttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10863636 |
cagaaacggacccatttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggat |
10863735 |
T |
|
| Q |
111 |
tgcagcacaatgatgttgaagcttagatctttcctg |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
10863736 |
tgcagcacaatgatgttgaagcttagatctttcctg |
10863771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 10545822 - 10545937
Alignment:
| Q |
31 |
ccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcacaatgatgttgaa |
130 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10545822 |
ccatgaaaatagtaggcctttaattgaacaagatcaacaagtcccttaaaatcatcttccaagcctattggaacttggattgcagcacaatgatgttgaa |
10545921 |
T |
|
| Q |
131 |
gcttagatctttcctg |
146 |
Q |
| |
|
|||| |||||| |||| |
|
|
| T |
10545922 |
gcttggatcttgcctg |
10545937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 10475300 - 10475427
Alignment:
| Q |
19 |
gacccatttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcac |
118 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||| |
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|
| T |
10475300 |
gacccatttgaatcatgaaaaaagtaggcctttaagtgcacaagatcaacaagtcccttaaaattatattccaagcctattggaacttggactgcagcaa |
10475399 |
T |
|
| Q |
119 |
aatgatgttgaagcttagatctttcctg |
146 |
Q |
| |
|
||||||||||||||| |||||| |||| |
|
|
| T |
10475400 |
tatgatgttgaagcttggatcttgcctg |
10475427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 10850179 - 10850286
Alignment:
| Q |
34 |
tgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcacaatgatgttgaagct |
133 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
10850179 |
tgaaaatagtaggcctttaattgaacaagatcaacaagtcccttaaaatcatcttccaagcctataggaacttggattgcagcactatgatgttgaagct |
10850278 |
T |
|
| Q |
134 |
tagatctt |
141 |
Q |
| |
|
|||||||| |
|
|
| T |
10850279 |
tagatctt |
10850286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 10447158 - 10447276
Alignment:
| Q |
23 |
catttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcacaatg |
122 |
Q |
| |
|
|||||| |||||||||| |||||||||| || || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10447158 |
catttggaccatgaaaagagtaggccttgaattgaacaagatcaacaagtcccttaaaatcatcttccaagcctattggaacttggattgcagcactatg |
10447257 |
T |
|
| Q |
123 |
atgttgaagcttagatctt |
141 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
10447258 |
atgttgaagctttgatctt |
10447276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 10519048 - 10519175
Alignment:
| Q |
19 |
gacccatttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcac |
118 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||| || || ||||||||||||||||||||||| |||||||| |
|
|
| T |
10519048 |
gacccatttgaatcatgaaaaaagtaggcctttaactgcacgagatcaacaagtcccttaaaattatattccaagcctattggaacttggactgcagcac |
10519147 |
T |
|
| Q |
119 |
aatgatgttgaagcttagatctttcctg |
146 |
Q |
| |
|
||||||||||||| || |||||| |||| |
|
|
| T |
10519148 |
aatgatgttgaagtttcgatcttgcctg |
10519175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 10508162 - 10508292
Alignment:
| Q |
16 |
acggacccatttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcag |
115 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||||| | || |||||||||||||||||| || ||||||| |
|
|
| T |
10508162 |
acggacccattagaaccatgaaaaaagtaggcctttaactgcacgagatcaacaagtcccttaaagttatattccaagcctattggaacctgcattgcag |
10508261 |
T |
|
| Q |
116 |
cacaatgatgttgaagcttagatctttcctg |
146 |
Q |
| |
|
||| |||||| |||||||| |||||| |||| |
|
|
| T |
10508262 |
cactatgatgctgaagcttggatcttgcctg |
10508292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 10464102 - 10464217
Alignment:
| Q |
19 |
gacccatttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcac |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||| || || ||||||||||||||||||||| | ||||||| |
|
|
| T |
10464102 |
gacccatttggaccatgaaaatagtaggactttaattgcacgagatcaacaagtcccttaaaattatattccaagcctattggaacttgaactgcagcaa |
10464201 |
T |
|
| Q |
119 |
aatgatgttgaagctt |
134 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10464202 |
tatgatgttgaagctt |
10464217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 10493606 - 10493728
Alignment:
| Q |
19 |
gacccatttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcac |
118 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| | ||||| ||||||||||||||||||| | |||| ||||||||||||||||||| | |||||||| |
|
|
| T |
10493606 |
gacccatttgaagcatgaaaaaagtaggcctttgattgcacgagatcaacaagtcccttaaaactatctcccaagcctattggaacttgtagtgcagcac |
10493705 |
T |
|
| Q |
119 |
aatgatgttgaagcttagatctt |
141 |
Q |
| |
|
||||| |||||||| |||||| |
|
|
| T |
10493706 |
tgtgatgctgaagcttggatctt |
10493728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 28102103 - 28101988
Alignment:
| Q |
31 |
ccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcacaatgatgttgaa |
130 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| | || || |||||||||||||||| ||||||| ||||||| || |
|
|
| T |
28102103 |
ccatgaaaataataggcctttaattgcacaagatcaacaagtcccttaaaatccttttttaaacctattggaacttggactgcagcagtgtgatgtttaa |
28102004 |
T |
|
| Q |
131 |
gcttagatctttcctg |
146 |
Q |
| |
|
|||| |||||| |||| |
|
|
| T |
28102003 |
gctttgatcttgcctg |
28101988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 27968716 - 27968831
Alignment:
| Q |
31 |
ccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcacaatgatgttgaa |
130 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||| | || || |||||||||||||||| ||||||| ||||||| || |
|
|
| T |
27968716 |
ccatgaaaataataggcctttaattgcaccagatcaacaagtcccttaaaatccttttttaaacctattggaacttggactgcagcagtgtgatgtttaa |
27968815 |
T |
|
| Q |
131 |
gcttagatctttcctg |
146 |
Q |
| |
|
|||| |||||| |||| |
|
|
| T |
27968816 |
gctttgatcttgcctg |
27968831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 28091871 - 28091756
Alignment:
| Q |
31 |
ccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcacaatgatgttgaa |
130 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||| | || || |||||||||||||||| ||||||| ||||||| || |
|
|
| T |
28091871 |
ccatgaaaataataggcctttaattgcaccagatcaacaagtcccttaaaatccttttttaaacctattggaacttggactgcagcagtgtgatgtttaa |
28091772 |
T |
|
| Q |
131 |
gcttagatctttcctg |
146 |
Q |
| |
|
|||| |||||| |||| |
|
|
| T |
28091771 |
gctttgatcttgcctg |
28091756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 7481560 - 7481438
Alignment:
| Q |
19 |
gacccatttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcac |
118 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||| | ||||| |||||||||| |||||||| | || | ||||||||||||||||||| | ||| |||| |
|
|
| T |
7481560 |
gacccatttgaagcatgaaaaaagtaggcttttgaatgcacgagatcaacaattcccttaaaacaatatcccaagcctattggaacttgtagtgcggcac |
7481461 |
T |
|
| Q |
119 |
aatgatgttgaagcttagatctt |
141 |
Q |
| |
|
||||| |||||||| |||||| |
|
|
| T |
7481460 |
tgtgatgctgaagcttggatctt |
7481438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 6915090 - 6914995
Alignment:
| Q |
30 |
accatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcacaatgatg |
125 |
Q |
| |
|
||||| |||| | ||||||||||| | |||||||||||||| |||||||| |||| |||||| |||||||||||||| | ||| ||||||||||| |
|
|
| T |
6915090 |
accatcaaaacaataggcctttaacttcacaagatcaacaactcccttaaaatcactttccaaacctattggaacttgaagtgctgcacaatgatg |
6914995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 10489530 - 10489657
Alignment:
| Q |
19 |
gacccatttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcac |
118 |
Q |
| |
|
|||| ||||||| |||||||| | ||||||||| | ||||| ||||||||||||||||||| | || | |||| |||||||||||||| | ||||||| |
|
|
| T |
10489530 |
gacctatttgaagcatgaaaaaaataggcctttgattgcacgagatcaacaagtcccttaaaactatatcccaaacctattggaacttgtagggcagcac |
10489629 |
T |
|
| Q |
119 |
aatgatgttgaagcttagatctttcctg |
146 |
Q |
| |
|
|||||| | ||||| |||||| |||| |
|
|
| T |
10489630 |
tatgatgcgggagcttggatcttgcctg |
10489657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 7477974 - 7477852
Alignment:
| Q |
19 |
gacccatttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcac |
118 |
Q |
| |
|
|||| ||||||| |||||||| ||||||| ||| | || || ||||||||||||||||||| | || | |||||||| |||||| ||| | |||||||| |
|
|
| T |
7477974 |
gacctatttgaagcatgaaaaaagtaggcttttgaatgtacgagatcaacaagtcccttaaaactatatcccaagcctgttggaaattgtagtgcagcac |
7477875 |
T |
|
| Q |
119 |
aatgatgttgaagcttagatctt |
141 |
Q |
| |
|
||||| |||||||| |||||| |
|
|
| T |
7477874 |
tctgatgctgaagcttggatctt |
7477852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 10863811 - 10863839
Alignment:
| Q |
186 |
ttgaattattatattgtaacgctgagatg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10863811 |
ttgaattattatattgtaacgctgagatg |
10863839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 15047763 - 15047884
Alignment:
| Q |
19 |
gacccatttgaaccatgaaaatagtaggcctttaagtgcacaagatcaacaagtcccttaagatcatcttccaagcctattggaacttggattgcagcac |
118 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||||| | ||||||||||||||||||||||| || |||||||| |||||||||| ||| |||||||||| |
|
|
| T |
15047763 |
gacccattggaaccatcaaaataataggcctttaacttcacaagatcaacaagtcccttaaaattttcttccaaacctattggaatttgaattgcagcac |
15047862 |
T |
|
| Q |
119 |
aatgatgttgaagcttagatct |
140 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
15047863 |
tatgatgccgaagcttagatct |
15047884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 44343230 - 44343278
Alignment:
| Q |
69 |
aagtcccttaagatcatcttccaagcctattggaacttggattgcagca |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
44343230 |
aagtcccttaaaatcatcttccaagcctatcggaacttggattacagca |
44343278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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