View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_high_36 (Length: 253)
Name: NF1704_high_36
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 38996546 - 38996778
Alignment:
| Q |
14 |
caaaggcgtaagtatctctataaatttgttctttttatttatcaaaatgcacccaaaatattctgatattaaagacattgttttaaaaaccggattggac |
113 |
Q |
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| T |
38996546 |
caaaagcgtaagtatctctataaatttgttctttttatttatcaaaatgcacccaaaatattctgatattaaagacattgttttaaaaaccggattggac |
38996645 |
T |
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| Q |
114 |
ggccgaaaattgggtggagcgacctaatggactggcaatgctattgaacaggtatgaaccgatgacttggattgaatcgggtaaatactatacctctttt |
213 |
Q |
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| T |
38996646 |
ggccgaaaattgggtggagcgacctaatggactggcaatgctattgaacgggtatgaaccgatgacttggattgaatcgggtaaatactatacctctttt |
38996745 |
T |
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| Q |
214 |
tcgatttctttgtacattttttctgaaattctt |
246 |
Q |
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| T |
38996746 |
tcgatttctttgtacattttttctgaaattctt |
38996778 |
T |
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