View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1704_high_43 (Length: 239)
Name: NF1704_high_43
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 51215417 - 51215198
Alignment:
| Q |
1 |
attaccaccttttccgtaggcaatgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagc |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51215417 |
attaccaccttttccataggcaatgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagc |
51215318 |
T |
|
| Q |
101 |
tgtagcttttggatttctgttccatccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51215317 |
tgtagcttttggatttctgttccatccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccac |
51215218 |
T |
|
| Q |
201 |
tttcacctactagagcaact |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
51215217 |
tttcacctactagagcaact |
51215198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 51202344 - 51202160
Alignment:
| Q |
20 |
gcaatgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctg |
119 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | |||||| | || || ||||||||||| |
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|
| T |
51202344 |
gcaatattggctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgttgtcttagccatttcacttgaagactttggatttctt |
51202245 |
T |
|
| Q |
120 |
ttccatccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttc |
204 |
Q |
| |
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||||||| ||| |||| || |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
51202244 |
ttccatcgagtgtaatgtggcctgaatctggatcataaaatctttgtatcaatgagatcactgttgattttccacttccactttc |
51202160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 51159748 - 51159552
Alignment:
| Q |
8 |
ccttttccgtaggcaatgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagct |
107 |
Q |
| |
|
||||||||||| ||||| || |||| | |||||||| || || |||||||||||||||||||||||||| || || || | |||||| | ||| | | |
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|
| T |
51159748 |
ccttttccgtatgcaatattggctcgaaccgtgtcattgaaaagaacaggctcttggcttaccagtcccatctgttgtcttagccatttcacctgcatcc |
51159649 |
T |
|
| Q |
108 |
tttggatttctgttccatccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttc |
204 |
Q |
| |
|
|||| |||||| ||||||| ||| |||| || ||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
51159648 |
tttgaatttctattccatcaagtgtaatgtgtcctgagtcaggatcataaaatctttgtagtaatgagatcactgttgattttccacttccactttc |
51159552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 29934278 - 29934474
Alignment:
| Q |
8 |
ccttttccgtaggcaatgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagct |
107 |
Q |
| |
|
||||||||||| ||||| || |||| || |||||||| || || ||||||||||||||||| || |||||||| || || | |||||| || || ||| |
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|
| T |
29934278 |
ccttttccgtatgcaatattggctcggactgtgtcattgaaaagaacaggctcttggcttactagccccatttgttgtctcagccatttcagttgaagcc |
29934377 |
T |
|
| Q |
108 |
tttggatttctgttccatccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttc |
204 |
Q |
| |
|
|||| |||||| ||||||| || | || || ||| | | || |||||||||||||| || || || ||||||||||||||||||||||||||||| |
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|
| T |
29934378 |
tttgaatttcttttccatcaagagttatgtgtcctaagttagggtcataaaatctttgtaataaggacatcactgttgattttccacttccactttc |
29934474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 51148827 - 51148645
Alignment:
| Q |
38 |
gtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttccatccagtttaatct |
137 |
Q |
| |
|
|||||||| || || | |||||||||||||||||||||||| || || || | |||||| | || | | |||| |||||| ||||||| || |||| | |
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|
| T |
51148827 |
gtgtcattgaaaagaataggctcttggcttaccagtcccatctgttgtcttagccatttcacttgcatcctttgaatttctattccatcaagagtaatgt |
51148728 |
T |
|
| Q |
138 |
gacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacctactagagcaact |
220 |
Q |
| |
|
| ||||| || || ||||| |||||||| | || |||||||||||||||||||||||||||||||| ||||| || |||||| |
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|
| T |
51148727 |
gccctgagtcagggtcatagaatctttgtagtaacgagatcactgttgattttccacttccactttctcctacgagtgcaact |
51148645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 49734605 - 49734820
Alignment:
| Q |
5 |
ccaccttttccgtaggcaatgttagctctgatggtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgta |
104 |
Q |
| |
|
||||||||||| || |||||||| |||| | ||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||| |||| |||| |
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|
| T |
49734605 |
ccaccttttccatacgcaatgttggctcgcacggtgtcattgaacagcacaggctcctgggttaccaggcccatttgctgcctaaaccatctaagttgta |
49734704 |
T |
|
| Q |
105 |
gcttttggatttctgttccatccagtttaatctgacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| |
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|
| T |
49734705 |
gcttttggatttctgttccatccagtttaatctgaccagaatctggatcataaaatctttgcagcaatgatatcactgttgactttccacttccactttc |
49734804 |
T |
|
| Q |
205 |
acctactagagcaact |
220 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
49734805 |
acctactagagcaact |
49734820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 36288725 - 36288543
Alignment:
| Q |
38 |
gtgtcattaaacagcacaggctcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttccatccagtttaatct |
137 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||| ||| ||||||||||||||| ||||||| | | |||| | |
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|
| T |
36288725 |
gtgtcattaaacaacacaggctcttggcttaccaagcccattttttgccttaaccatttaacctgaagcttttggatttctattccatcaactgtaatgt |
36288626 |
T |
|
| Q |
138 |
gacctgaatctggatcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacctactagagcaact |
220 |
Q |
| |
|
||||||||||| | ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || |||||| |
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|
| T |
36288625 |
gacctgaatctaggtcatagaatctttgcaataatgagataactgttgattttccacttccactttctcctaccagtgcaact |
36288543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 38522808 - 38522956
Alignment:
| Q |
59 |
tcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttccatccagtttaatctgacctgaatctggatcataaa |
158 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||| || | ||||| || | |||||| | ||||| ||| | || | ||||||||| |||||||||| |
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|
| T |
38522808 |
tcttggcttacaagacccatttgctgccttaaccactttaactgtaactgacgaatttctatcccatcaagtgtgatttcacctgaatcaggatcataaa |
38522907 |
T |
|
| Q |
159 |
atctttgcaacaatgagatcactgttgattttccacttccactttcacc |
207 |
Q |
| |
|
||||||||||||| | ||||| || ||||| ||||||||||||||||| |
|
|
| T |
38522908 |
atctttgcaacaaagcaatcacagtcgatttcccacttccactttcacc |
38522956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 38539963 - 38540111
Alignment:
| Q |
59 |
tcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttccatccagtttaatctgacctgaatctggatcataaa |
158 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||| || | ||||| || | |||||| | ||||| ||| | || | ||||||||| |||||||||| |
|
|
| T |
38539963 |
tcttggctcacaagacccatttgctgccttaaccactttaactgtaactgacgaatttctatcccatcaagtgtgatttcacctgaatcaggatcataaa |
38540062 |
T |
|
| Q |
159 |
atctttgcaacaatgagatcactgttgattttccacttccactttcacc |
207 |
Q |
| |
|
||||||| ||||| | ||||| || ||||| ||||||||||||||||| |
|
|
| T |
38540063 |
atctttgtaacaaagcaatcacagtcgatttcccacttccactttcacc |
38540111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 38562181 - 38562329
Alignment:
| Q |
59 |
tcttggcttaccagtcccatttgctgcctaaaccatttaagctgtagcttttggatttctgttccatccagtttaatctgacctgaatctggatcataaa |
158 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||| || | ||||| || | |||||| | ||||| ||| | || | ||||||||| |||||||||| |
|
|
| T |
38562181 |
tcttggctcacaagacccatttgctgccttaaccactttaactgtaactgacgaatttctatcccatcaagtgtgatttcacctgaatcaggatcataaa |
38562280 |
T |
|
| Q |
159 |
atctttgcaacaatgagatcactgttgattttccacttccactttcacc |
207 |
Q |
| |
|
||||||| ||||| | ||||| || ||||| ||||||||||||||||| |
|
|
| T |
38562281 |
atctttgtaacaaagcaatcacagtcgatttcccacttccactttcacc |
38562329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 33789508 - 33789576
Alignment:
| Q |
151 |
atcataaaatctttgcaacaatgagatcactgttgattttccacttccactttcacctactagagcaac |
219 |
Q |
| |
|
||||||||||||||| | |||| || ||||||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
33789508 |
atcataaaatctttgtactaatgctattgctgttgattttccacttccacttgcaccaactagtgcaac |
33789576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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