View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_high_44 (Length: 239)
Name: NF1704_high_44
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_44 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 31176456 - 31176230
Alignment:
| Q |
13 |
aatatacttagagaaaattatattgcaagtatacattgtctcaactatcataaagatcatatccacatggattgtgatgttcttaacttcaccattgtct |
112 |
Q |
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| T |
31176456 |
aatatacttagagaaaattatattgcaagtatacattgtctcaactatcataaagatcatatccacatggattgtgatgttcttaacttcaccattgtct |
31176357 |
T |
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| Q |
113 |
ttactatcatgattaagttaggattaagtaactaacactcttccgacgttcatacttactaagtaaatcatgcaacattaaaaatatcaaaaccttcgta |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31176356 |
ttactatcatgattaacttaggattaagtaactaacactcttccgacgttcatacttactaagtaaatcatgcaacattaaaaatatcaaaaccttccta |
31176257 |
T |
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| Q |
213 |
tgaacttgaaagctattcctagacatt |
239 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31176256 |
tgaacttgaaagctattcctagacatt |
31176230 |
T |
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