View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_high_46 (Length: 231)
Name: NF1704_high_46
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 218586 - 218371
Alignment:
| Q |
1 |
agttttgagggactaaaagtccattaaaacaaaaaattggtatatttactttagcaaaagatatttaactcaaaaataaataacatatatttagaatatg |
100 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
218586 |
agttttgagggactaaaagttcattaaaataaaaaattggtatatttacatgatcaaaagatatttaactcaaaaataaataacatatatttagaatatg |
218487 |
T |
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| Q |
101 |
aagtaaactttgaacactttttacaaaattgcaaca--atgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |
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| T |
218486 |
aagtaaactttgaacactttttacaaaattgcaacaatatgcaggctcgccggagaagctctgtccggccaccggtggcggagaaggattctaaacattt |
218387 |
T |
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| Q |
199 |
tatgaaagccatcctt |
214 |
Q |
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|||||||||||||||| |
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| T |
218386 |
tatgaaagccatcctt |
218371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 223660 - 223579
Alignment:
| Q |
133 |
aacaatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattttatgaaagccatcctt |
214 |
Q |
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| T |
223660 |
aacaatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattttatgaaagccatcctt |
223579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 199291 - 199215
Alignment:
| Q |
134 |
acaatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattttatgaaagccat |
210 |
Q |
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| T |
199291 |
acaatgcagcctcaccggagaagatgtggccggtcaccggcgccggagaaagcatcgaagcattttatgaaagccat |
199215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 3809431 - 3809355
Alignment:
| Q |
135 |
caatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaag-attctaaacattttatgaaagccat |
210 |
Q |
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|||||||| ||||||||||||| ||||||| | || |||||||||||| | | || ||||||||| |||||||||| |
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| T |
3809431 |
caatgcagcctcgccggagaaggtctgtccagtcattggcgccggagaaggtaatcaaaacattttctgaaagccat |
3809355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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