View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1704_high_5 (Length: 454)
Name: NF1704_high_5
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_5 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 786585 - 786153
Alignment:
| Q |
18 |
aattattccttaagacttgtgcaagaactaaagcatcaaaagataaaaaatgaagggagtaatattttttgagaaatgaagaggatcgctacttaaatcg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
786585 |
aattattccttaagacttgtgcaagaactaaagcattaaaagataaaaaatgaagggagtaatattttttgagaaatgaagaggatcgctacttaaatcg |
786486 |
T |
|
| Q |
118 |
gtaatcggttgaggattgcatatgtcaagagtttgggctatactttcgacgaaaaactaagtttaaaattgagtcattgaccctcttttatcaataaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
786485 |
gtaatcggttgaggattgcatatgtcaagagtttgggctatactttcgacgaaaaactaagtttaaaattgagtcattgaccctcttttatcaataaaaa |
786386 |
T |
|
| Q |
218 |
agtcataaaccagaattgattatcgtatttttgaatgcctttaatttgttgttacatactaaatttggtacaatgttatatgatttggtgctaacttatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
786385 |
agtcataaaccagaattgattatcgtatttttgaatgcctttaatttgttgttacatactaaatttggtacaatgttatatgatttggtgctaacttatc |
786286 |
T |
|
| Q |
318 |
aagtgttctaactttccatagaacaccatgtgagtttgtatatgctgtccataatatctatctatgatgatattgtgtggactcatgtcttgagaggcca |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
786285 |
aagtgttctaactttccatagaacaccatgtgagtttgtatatgctgtccataatat----ctatgatgatattgtgtggactcatgtcttgagaggcca |
786190 |
T |
|
| Q |
418 |
accccctttgttgatctttccgtaaaatcctcagttt |
454 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
786189 |
accccctttgttgatctttcagtaaaatcatcagttt |
786153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 18742162 - 18742224
Alignment:
| Q |
18 |
aattattccttaagacttgtg-caagaactaaagcatcaaaagataaaaaatgaagggagtaa |
79 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||||||| || ||||| ||||||||| |
|
|
| T |
18742162 |
aattattccttaagacttgtgccaagaggtaaaacatcaaaagaaaagaaatggagggagtaa |
18742224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 32183542 - 32183481
Alignment:
| Q |
18 |
aattattccttaagacttgtgc-aagaactaaagcatcaaaagataaaaaatgaagggagta |
78 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||| |
|
|
| T |
32183542 |
aattactccttaagacttgtgccaagagctaaaacatcaaaagataaaaaatggagggagta |
32183481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 37875788 - 37875720
Alignment:
| Q |
18 |
aattattccttaagacttgtg-caagaactaaagcatcaaaagataaaaaatgaagggagtaatatttt |
85 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||||| || ||||| |||||||| |||||| |
|
|
| T |
37875788 |
aattattccttaagacttgtgccaagagctaaaacatcaaaagaaaagaaatggagggagtattatttt |
37875720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 21727886 - 21727949
Alignment:
| Q |
16 |
tcaattattccttaagacttgtgc-aagaactaaagcatcaaaagataaaaaatgaagggagta |
78 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||| ||||||||||||||||| | |||||||| |
|
|
| T |
21727886 |
tcaattactccttaagacttgtgccaagagctaaaacatcaaaagataaaaaacggagggagta |
21727949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 46690079 - 46690140
Alignment:
| Q |
18 |
aattattccttaagacttgtgc-aagaactaaagcatcaaaagataaaaaatgaagggagta |
78 |
Q |
| |
|
||||| ||||||||| |||||| |||| ||||| ||||||||||||||||||| |||||||| |
|
|
| T |
46690079 |
aattactccttaagatttgtgccaagagctaaaacatcaaaagataaaaaatggagggagta |
46690140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 840788 - 840849
Alignment:
| Q |
18 |
aattattccttaagacttgtgc-aagaactaaagcatcaaaagataaaaaatgaagggagta |
78 |
Q |
| |
|
||||||| |||||||||||||| |||| |||| ||||||||||||||||||| |||||||| |
|
|
| T |
840788 |
aattatttcttaagacttgtgccaagagttaaaacatcaaaagataaaaaatggagggagta |
840849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 26025589 - 26025528
Alignment:
| Q |
18 |
aattattccttaagacttgtgc-aagaactaaagcatcaaaagataaaaaatgaagggagta |
78 |
Q |
| |
|
||||| ||| |||||||||||| |||| ||||| ||||||||||||||||| | |||||||| |
|
|
| T |
26025589 |
aattactccctaagacttgtgccaagagctaaaacatcaaaagataaaaaacggagggagta |
26025528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University