View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_high_6 (Length: 454)
Name: NF1704_high_6
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 25 - 437
Target Start/End: Complemental strand, 36333283 - 36332872
Alignment:
| Q |
25 |
atcatgttttcatgtcagaaaatcgttcaggaatcaggaaaactctctgttgttttgattttctgaaatctgttgggatctgtgctgtttttacgtgacc |
124 |
Q |
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| T |
36333283 |
atcatgttttcatgtcagaaaatcgttcaggaatcaggaaaactctctgttgttttgattttctgaaatctgttgggatctgtgctgtttttacgtgacc |
36333184 |
T |
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| Q |
125 |
aagaagatagtacaaattcaaaacagtaaataaagaaagaccaaactttcccttagtttatgggatatggaaacagataactaagtgatttaacacttta |
224 |
Q |
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| T |
36333183 |
aagaagatagtacaaattcaaaacagtaaataaagaaagaccaaactttcccttagtttatgggatatggaaacagataactaagtgatttaacacttta |
36333084 |
T |
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| Q |
225 |
acagtatcagtgatta--nnnnnnnactattaaccttttctttggctgctgctgatatttgattctgtgatgaagaggctgttcttatagcagcagaagc |
322 |
Q |
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| T |
36333083 |
acagtatcagtgattatttttttttactattaaccttttctttggctgctgctgatatttgattctgtgatgaagaggctgttcttatagcagcagaagc |
36332984 |
T |
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| Q |
323 |
atcattggatattatcatcttctgttgttgtagctgaagattctgctgatccatattattattattatgatctgatgaaaaagaagatgcttttttacta |
422 |
Q |
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| T |
36332983 |
atcattggatattatcatcttctgttgttgtagctgaagattctgctgatcca---tattattattatgatctgatgaaaaagaagatgcttttttacta |
36332887 |
T |
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| Q |
423 |
cttaagggtgattct |
437 |
Q |
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| T |
36332886 |
cttaagggtgattct |
36332872 |
T |
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