View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_high_9 (Length: 445)
Name: NF1704_high_9
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 35 - 426
Target Start/End: Complemental strand, 5563163 - 5562771
Alignment:
| Q |
35 |
tactacatacgtaccaggccagaagcaaaagttcaaagcatccaaaacaaacaagtactgaacagtgagaggaccattatcaaaataatgaatcccttca |
134 |
Q |
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| T |
5563163 |
tactacatacgtaccaggccagaagcaaaagttcaaagcatccaaaacaaacaagtactgaacagtgagaggaccattatcaaaataatgaatcccttca |
5563064 |
T |
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| Q |
135 |
aaatcccattcaactttcggaatagaatcaatggtgctcactactttctcaatccctgaagnnnnnnnnn-cataatcacaaagcataaacgcaacgcat |
233 |
Q |
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| T |
5563063 |
aaatcccattcaactttcggaatagaatcaatggtgctcactactttctcaatccctgaaaaaaaaaaacacataatcacaaagcataaacgcaacgcat |
5562964 |
T |
|
| Q |
234 |
ttgaatatgagaaagatacagcgtaagtcgaacgaagaatgaacctgaagagtcaacaacgacatgagaggagtgactagcgacccaagcagaggttgct |
333 |
Q |
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| T |
5562963 |
ttgaatatgagaaagatacagcgttagtcgaacgaagaatgaacctgaggagtcaacaacgacatgagaggagtggctagcgacccaagcagaggttgat |
5562864 |
T |
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| Q |
334 |
cttacgtcgtccatggagttttcacaatgctgctgcgccgtttcaatgtgatgaatgaaccctaaaaattaaccaaagctttatggaaaataa |
426 |
Q |
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| T |
5562863 |
cttacgtcgtccatggagttttcacaatgctgctgcgccgtttcaatgtgatgaatgaaccctaaaaattaaccgaagctttatggaaaataa |
5562771 |
T |
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