View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_1 (Length: 829)
Name: NF1704_low_1
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 789; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 1 - 813
Target Start/End: Complemental strand, 53043257 - 53042445
Alignment:
| Q |
1 |
tcaaccttccatcctcttcatggacattcaaatttaaacatccgatacacaacaatgacctttagaacatccaaatataatagtaaacttaccaatagaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53043257 |
tcaaccttccatcctcttcatggaaattcaaatgtaaacatccgatacacaacaatgacctttagaacatccaaatataatagtaaacttaccaatagaa |
53043158 |
T |
|
| Q |
101 |
gccacttcacatttcccatcatggtaggtatccttaatatattgaacaacttccaatgctttagccctttcttgaatagatgaattggaaccattaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53043157 |
gccacttcacatttcccatcatggtaggtatccttaatatattgaacaacttccaatgctttagccctttcttgaatagatgaattggaaccattaaatt |
53043058 |
T |
|
| Q |
201 |
ggaagatttttgactcagtatccagaataaaaatatcatcatggttgagtgaagatcgagcaaaaggaacctataaccaatataaatatttaatcaaaag |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53043057 |
ggaagatttttgactcagtatcaagaataaaaatatcatcatggttgagtgaagatcgagcaaaaggaacctataaccaatataaatatttaatcaaaag |
53042958 |
T |
|
| Q |
301 |
gtagaaactagcgtttatatatgtgtgattgtctatactaataatgtgcaagtctcaaaccttaatgaatcaataacaggggaataatatcaaacttgcc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53042957 |
gtagaaactagcgtttatatatgtgtgattgtctatactaataatgtgcaagtctcaaacctcaatgaatcaataacaggggaataatatcaaacttgcc |
53042858 |
T |
|
| Q |
401 |
tctttgacatacacaacatgtttccctttgcagacaaacaaccgtgtcttatgttcttcagcttcaacatgcttaaaaccagaggcagctccaccttctt |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53042857 |
tctttgacatacacaacatgtttccctttgcagacaaacaaccgtgtcttatgttcttcagcttcaacatgcttaaaaccagaggcagctccaccttctt |
53042758 |
T |
|
| Q |
501 |
gtggtataattcatggtttgaaatatgacaggaacttctgagtttcatgaccctgtacttcacgatactgaacagcacgtcctcctagaactgcatccaa |
600 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53042757 |
gtggtataatacatggtttgaaatatgacaggaacttctgagtttcatgaccctgtacttcacgatactgaacagcacgtcctcctagaactgcatccaa |
53042658 |
T |
|
| Q |
601 |
ctcaactgttttgatggctgcggcaccagcttcatcctattttatagttatgatcaccattgagtaaatgggaaaattataacaaatagtgaactaaaaa |
700 |
Q |
| |
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| T |
53042657 |
ctcaactgttttgatggctgcggcaccagcttcatcctattttatagttatgatcaccattgagtaaatgggaaaattataacaaatagtgaactaaaaa |
53042558 |
T |
|
| Q |
701 |
caggcgaaaggggatgagaatatacgaacaataaaacttacctgactggtgtctttaccaagccaataatgaatatcatggcgcagagcaccactttttg |
800 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53042557 |
caggcgaaaggggatgacaatatacgaacaataaaacttacctgactggtgtctttaccaagccaataatgaatatcatggcgcagagcaccactttttg |
53042458 |
T |
|
| Q |
801 |
atgccgttgtcta |
813 |
Q |
| |
|
||||||||||||| |
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|
| T |
53042457 |
atgccgttgtcta |
53042445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 7e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 392 - 644
Target Start/End: Original strand, 15965023 - 15965275
Alignment:
| Q |
392 |
aaacttgcctctttgacatacacaacatgtttccctttgcagacaaacaaccgtgtcttatgttcttcagcttcaacatgcttaaaaccagaggcagctc |
491 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||| |||||| || |||| ||||||||||| ||| ||| |
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| T |
15965023 |
aaacttgcctctttgacatgtacaacatgtttccctctgcatacaaacaaccgtgtcttgtgtttttcagcctcggcatgtttaaaaccagaagcaactc |
15965122 |
T |
|
| Q |
492 |
caccttcttgtggtataattcatggtttgaaatatgacaggaacttctgagtttcatgaccctgtacttcacgatactgaacagcacgtcctcctagaac |
591 |
Q |
| |
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|||||||||| |||||||| || ||||||||||| || |||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||| ||| | |
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| T |
15965123 |
caccttcttgaggtataatacaaggtttgaaataagaaaggaacttttcagtttcatggccctgtacttcccgatactgaacagcacgtcctccgagagc |
15965222 |
T |
|
| Q |
592 |
tgcatccaactcaactgttttgatggctgcggcaccagcttcatcctatttta |
644 |
Q |
| |
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|||||||| ||||||||| ||||||||||| |||||||||||||||| ||||| |
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| T |
15965223 |
tgcatccagctcaactgtcttgatggctgcagcaccagcttcatcctgtttta |
15965275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 87 - 277
Target Start/End: Original strand, 15964715 - 15964905
Alignment:
| Q |
87 |
acttaccaatagaagccacttcacatttcccatcatggtaggtatccttaatatattgaacaacttccaatgctttagccctttcttgaatagatgaatt |
186 |
Q |
| |
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|||||||||||| ||| | || |||||||| ||||||||||||||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||| |
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| T |
15964715 |
acttaccaatagcagctatctcgcatttcccctcatggtaggtatccttaatatactgtacaacctccaaagctttagctctttcttgaatagatgaatt |
15964814 |
T |
|
| Q |
187 |
ggaaccattaaattggaagatttttgactcagtatccagaataaaaatatcatcatggttgagtgaagatcgagcaaaaggaacctataac |
277 |
Q |
| |
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|||||||||||||||||||||||||||||| || || |||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15964815 |
ggaaccattaaattggaagatttttgactcggtgtcaagaacaaaaatatcatcatggtttagtgaagatcgagcaaaaggaacctataac |
15964905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 738 - 813
Target Start/End: Original strand, 15965368 - 15965443
Alignment:
| Q |
738 |
ttacctgactggtgtctttaccaagccaataatgaatatcatggcgcagagcaccactttttgatgccgttgtcta |
813 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||| || ||||| |||||||||||||||||||| || |||||||| |
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| T |
15965368 |
ttacctgactggtgtctttaccaatccagtaatggatgtcatgacgcagagcaccactttttgaggcagttgtcta |
15965443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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