View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1704_low_11 (Length: 427)

Name: NF1704_low_11
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1704_low_11
NF1704_low_11
[»] chr7 (5 HSPs)
chr7 (19-411)||(354132-354524)
chr7 (33-240)||(10580686-10580892)
chr7 (20-227)||(10575299-10575505)
chr7 (303-353)||(10580612-10580662)
chr7 (20-68)||(39954909-39954957)
[»] chr3 (7 HSPs)
chr3 (19-227)||(21584660-21584867)
chr3 (19-226)||(25084951-25085157)
chr3 (19-226)||(24923523-24923729)
chr3 (19-226)||(24497322-24497528)
chr3 (19-226)||(24919949-24920155)
chr3 (19-166)||(31825620-31825766)
chr3 (19-227)||(24981958-24982165)
[»] chr8 (1 HSPs)
chr8 (19-227)||(14261095-14261302)
[»] chr4 (2 HSPs)
chr4 (33-226)||(22898466-22898658)
chr4 (33-226)||(22950134-22950326)


Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 354524 - 354132
Alignment:
Q  19 cttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccact 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354524 cttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccact 354425  T
Q  119 gatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  354424 gatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgctatgtcactttgcacct 354325  T
Q  219 ccctttccttgaccagacattacaaacacacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcgttg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  354324 ccctttccttgaccagacattacaaacacacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcattg 354225  T
Q  319 aagaatccataacactgctccagcaatgatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatg 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354224 aagaatccataacactgctccagcaatgatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatg 354132  T

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Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 33 - 240
Target Start/End: Complemental strand, 10580892 - 10580686
Alignment:
Q  33 gctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacac 132  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  10580892 gctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaa-ccactgatcctcttcacac 10580794  T
Q  133 cacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttccttgacc 232  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||    
T  10580793 caactcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcaatatcactttgcacctccctttcattgacc 10580694  T
Q  233 agacatta 240  Q
    ||||||||    
T  10580693 agacatta 10580686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 10575505 - 10575299
Alignment:
Q  20 ttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactg 119  Q
    |||||||| ||| |||||||||||||||||||||| |  ||  |||||| |||||| ||||||||||| |||||| ||||||||||||| ||  ||||||    
T  10575505 ttcctcctcgcatgctcagtgtaagtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaat-ccactg 10575407  T
Q  120 atcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctc 219  Q
    || || |||||||| |||||||||||||||| |||||||||||||||||| |||||||| |||||  | |  |||||||||||||||| ||||||||| |    
T  10575406 attcttttcacacctcctcttctcgccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacccc 10575307  T
Q  220 cctttcct 227  Q
    ||||||||    
T  10575306 cctttcct 10575299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 10580662 - 10580612
Alignment:
Q  303 catttgttatgcgttgaagaatccataacactgctccagcaatgatcacaa 353  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  10580662 catttgttatgcgttgaagaatccatgacactgctccaacaatgataacaa 10580612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 39954909 - 39954957
Alignment:
Q  20 ttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattct 68  Q
    |||||||| ||| |||||||||||||||||||||||| |||| ||||||    
T  39954909 ttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattct 39954957  T

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Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 21584660 - 21584867
Alignment:
Q  19 cttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccact 118  Q
    ||||||||||||| |||||||||| ||||| ||||||| |||| |||||| |||||||||||| |  ||||||||| |||||||||| || ||| |||||    
T  21584660 cttcctccttgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaa-ccact 21584758  T
Q  119 gatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacct 218  Q
    ||| ||||| |||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||| | | |||||| || |  |||| ||||||||||    
T  21584759 gattctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacct 21584858  T
Q  219 ccctttcct 227  Q
    |||||||||    
T  21584859 ccctttcct 21584867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 25085157 - 25084951
Alignment:
Q  19 cttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccact 118  Q
    ||||||||||||  |||||||||| ||||| |||||||  ||| |||||| |||||| |||||||| || |||||  |||| ||||| || ||| |||||    
T  25085157 cttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaa-ccact 25085059  T
Q  119 gatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacct 218  Q
    ||| ||||||||||||||||||||||||||||||||||| || ||||| || || || || |||||| | | ||||||||| | ||| | ||||||||||    
T  25085058 gattctcttcacaccacctcttctcgccaatctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacct 25084959  T
Q  219 ccctttcc 226  Q
    ||||||||    
T  25084958 ccctttcc 25084951  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 24923523 - 24923729
Alignment:
Q  19 cttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccact 118  Q
    ||||||||||||  |||||||||| || |||||||||| |||  |||||| |||||| |||||||| || |||||  |||| |||||||| ||| |||||    
T  24923523 cttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaa-ccact 24923621  T
Q  119 gatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacct 218  Q
    ||| ||||| |||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | ||||||||| | ||| | ||||||||||    
T  24923622 gattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacct 24923721  T
Q  219 ccctttcc 226  Q
    ||||||||    
T  24923722 ccctttcc 24923729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 24497322 - 24497528
Alignment:
Q  19 cttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccact 118  Q
    ||||||||||||  |||||||||| ||||| |||||||  ||| |||| | |||||| |||||||| || |||||  |||| ||||||| | || |||||    
T  24497322 cttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcataga-tcaatccact 24497420  T
Q  119 gatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacct 218  Q
    ||| ||||| |||||||||||||| ||||||| |||||| || ||||| || || || || |||||  | | ||||||||| | ||| | ||||||||||    
T  24497421 gattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacct 24497520  T
Q  219 ccctttcc 226  Q
    ||||||||    
T  24497521 ccctttcc 24497528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 24919949 - 24920155
Alignment:
Q  19 cttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccact 118  Q
    ||||||||| ||  |||||||||| || |||||||||| |||  ||||||  ||||| |||||||| || |||||  |||| |||||||| ||| || ||    
T  24919949 cttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaa-ccgct 24920047  T
Q  119 gatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacct 218  Q
    ||| |||||||||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | |||||| || | ||| | ||||||||||    
T  24920048 gattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacct 24920147  T
Q  219 ccctttcc 226  Q
    ||||||||    
T  24920148 ccctttcc 24920155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 31825620 - 31825766
Alignment:
Q  19 cttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccact 118  Q
    ||||||||| ||  |||||||||| || || |||||||  ||  |||||| |||||| |||||||| || |||||  |||| |||||||| ||| |||||    
T  31825620 cttcctcctagcgtgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaa-ccact 31825718  T
Q  119 gatcctcttcacaccacctcttctcgccaatctacgaatcgctggctt 166  Q
    |||||||||||||||||||||||||||||||| |||||| || |||||    
T  31825719 gatcctcttcacaccacctcttctcgccaatcgacgaatggcaggctt 31825766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 24982165 - 24981958
Alignment:
Q  19 cttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccact 118  Q
    ||||||||| ||  |||||||||| ||||| |||||||  ||  |||||| |||||| |||||||| || |||||  |||| ||||| || ||| |||||    
T  24982165 cttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaa-ccact 24982067  T
Q  119 gatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacct 218  Q
    ||| ||||| |||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | |||||| || | ||| | ||||||||||    
T  24982066 gattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacct 24981967  T
Q  219 ccctttcct 227  Q
    |||||||||    
T  24981966 ccctttcct 24981958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 14261095 - 14261302
Alignment:
Q  19 cttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccact 118  Q
    ||||||||| ||| | ||||| || ||||||||||| |  ||| |||||| |||||||||||||||||| || |   |||| ||||| || ||  || ||    
T  14261095 cttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaac-ccgct 14261193  T
Q  119 gatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacct 218  Q
    ||| ||||||||||| ||||||||||| ||||  ||||||||||||||||| |||||||| |||||  | | ||| || |||||||||| ||||||||||    
T  14261194 gattctcttcacacctcctcttctcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacct 14261293  T
Q  219 ccctttcct 227  Q
    |||||||||    
T  14261294 ccctttcct 14261302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 22898658 - 22898466
Alignment:
Q  33 gctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacac 132  Q
    ||||||||||||| |||||||| | |||| |||||| ||| || ||||||||||| || | | | |||||||| || ||| |||||||| | |||||| |    
T  22898658 gctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaa-ccactgatacgcttcactc 22898560  T
Q  133 cacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc 226  Q
    | ||||| |  || |  | |||||||||||||||||||||||| || |||||  | | ||| ||||| ||||||| |||||| || ||||||||    
T  22898559 ctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcc 22898466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 22950326 - 22950134
Alignment:
Q  33 gctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacac 132  Q
    ||||||||||||| |||||||| | |||| |||||| ||| || ||||||||||| || | | | |||||||| || ||| |||||||| | |||||| |    
T  22950326 gctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaa-ccactgatacgcttcactc 22950228  T
Q  133 cacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc 226  Q
    | ||||| |  || |  | |||||||||||||||||||||||| || |||||  | | ||| ||||| ||||||| |||||| || ||||||||    
T  22950227 ctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcc 22950134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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