View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1704_low_12 (Length: 399)

Name: NF1704_low_12
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1704_low_12
NF1704_low_12
[»] chr7 (8 HSPs)
chr7 (4-381)||(7199823-7200195)
chr7 (68-129)||(3756376-3756438)
chr7 (70-120)||(10084622-10084672)
chr7 (75-120)||(9902174-9902220)
chr7 (68-129)||(33818959-33819021)
chr7 (68-129)||(41909365-41909426)
chr7 (92-120)||(31756888-31756916)
chr7 (65-129)||(46080898-46080962)
[»] chr8 (4 HSPs)
chr8 (32-129)||(22842149-22842249)
chr8 (70-120)||(38006564-38006615)
chr8 (68-130)||(33102110-33102173)
chr8 (68-129)||(12750156-12750218)
[»] chr5 (8 HSPs)
chr5 (68-129)||(37442613-37442674)
chr5 (69-129)||(9828181-9828241)
chr5 (68-129)||(32827080-32827141)
chr5 (68-129)||(32303609-32303671)
chr5 (65-125)||(9979677-9979738)
chr5 (69-120)||(34594666-34594717)
chr5 (79-129)||(15398371-15398421)
chr5 (68-120)||(8055165-8055218)
[»] chr3 (3 HSPs)
chr3 (11-129)||(36703049-36703169)
chr3 (69-120)||(20991562-20991614)
chr3 (68-119)||(35310435-35310487)
[»] chr2 (9 HSPs)
chr2 (68-129)||(39556023-39556084)
chr2 (72-129)||(43294660-43294717)
chr2 (8-129)||(13387318-13387441)
chr2 (68-129)||(17793874-17793935)
chr2 (68-129)||(33833456-33833517)
chr2 (68-120)||(8513961-8514013)
chr2 (68-120)||(6620013-6620066)
chr2 (92-120)||(8514054-8514082)
chr2 (8-56)||(39555931-39555979)
[»] chr6 (7 HSPs)
chr6 (62-129)||(23252889-23252957)
chr6 (68-120)||(2725849-2725902)
chr6 (68-125)||(30841112-30841169)
chr6 (68-129)||(2146731-2146792)
chr6 (75-129)||(3607063-3607117)
chr6 (68-129)||(17497609-17497670)
chr6 (68-120)||(20890415-20890467)
[»] chr4 (8 HSPs)
chr4 (31-108)||(30097447-30097525)
chr4 (68-129)||(959083-959144)
chr4 (68-129)||(52450178-52450240)
chr4 (66-120)||(1845833-1845888)
chr4 (70-120)||(24393619-24393670)
chr4 (86-129)||(37688820-37688863)
chr4 (68-129)||(8434238-8434299)
chr4 (68-120)||(33648209-33648262)
[»] scaffold0254 (1 HSPs)
scaffold0254 (68-129)||(23192-23253)
[»] chr1 (3 HSPs)
chr1 (69-129)||(14210605-14210664)
chr1 (68-120)||(21322574-21322627)
chr1 (72-116)||(29855941-29855986)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 4 - 381
Target Start/End: Original strand, 7199823 - 7200195
Alignment:
Q  4 tcctatctgtttttattcattc-cagtcctacgtgagttaacgcacgctaaaaaatagttatgtaagttaactcacgctcgactatttgacggaaatgag 102  Q
    |||||||| ||||| ||||||  ||||||||| ||||||||| |||||||||||| ||||| ||||||||| |||||||||| |||||||||||||| ||    
T  7199823 tcctatctatttttgttcattttcagtcctacatgagttaactcacgctaaaaaacagttacgtaagttaa-tcacgctcgattatttgacggaaataag 7199921  T
Q  103 caaaaacagatgggagaaaaacaattagttaaaagtatatcccttcttttgtgggatatatgccattttgaggctggagcccatattctgttacaccatg 202  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7199922 caaaaacagatgggagaaaaacaattagctaaaagtatatcccttcttttgtgggatatatgccattttgaggctggagcccatattctgttacaccatg 7200021  T
Q  203 cctactacttttagcacgcctatatatgcatttgtttgttcttacttgttttttctatgcatattgcattgcagatttagttctagagctttgaaaggaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  7200022 cctactacttttagcacgcctatatatgcatttgtttgttcttacttgttttttctatgcat-----attgcagatttagttctagagctttgaaaggaa 7200116  T
Q  303 aagaagaattatttgggctgttttaagttgttatcctctattagtaatgtgtaatctcgtgtttgtacttatatattgt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7200117 aagaagaattatttgggctgttttaagttgttatcctctattagtaatgtgtaatctcgtgtttgtacttatatattgt 7200195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 3756438 - 3756376
Alignment:
Q  68 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| | ||||||    
T  3756438 agttaactcacactcgactattttgacgggaatgagcaaaaacaaatgggagaagagcaatta 3756376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 10084672 - 10084622
Alignment:
Q  70 ttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaa 120  Q
    |||||||||||| | ||||||||||| |||||||||||||||||| |||||    
T  10084672 ttaactcacgcttggctatttgacgggaatgagcaaaaacagatgagagaa 10084622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 9902174 - 9902220
Alignment:
Q  75 tcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 120  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  9902174 tcacgctcgattattttgacgggaatgagcaaaaacagatgggagaa 9902220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 33818959 - 33819021
Alignment:
Q  68 agttaactcacgctcgacta-tttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||||||| ||| ||| ||||||||  |||||||||||||||||| |||||| ||||||    
T  33818959 agttaactcacgttcgcctactttgacggggatgagcaaaaacagatggaagaaaagcaatta 33819021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 41909365 - 41909426
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||| ||||| || |||||||||| |||||| ||||||||||| ||||| | ||||||    
T  41909365 agttaacttacgcttgattatttgacgggaatgagaaaaaacagatgagagaagagcaatta 41909426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 31756888 - 31756916
Alignment:
Q  92 acggaaatgagcaaaaacagatgggagaa 120  Q
    |||||||||||||||||||||||||||||    
T  31756888 acggaaatgagcaaaaacagatgggagaa 31756916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 46080898 - 46080962
Alignment:
Q  65 gtaagttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||||||| |||||  |||| |||  |||||||||||||||||||| ||||| | ||||||    
T  46080898 gtaagttaactcgcgctccgctatctgaaagaaatgagcaaaaacagatgagagaagagcaatta 46080962  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 22842249 - 22842149
Alignment:
Q  32 tacgtgagttaacgcacgctaaaaaatag--ttatgtaagttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaaaaacaatt 128  Q
    |||||||||||||||| || ||||||||   ||| || ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| |||||||    
T  22842249 tacgtgagttaacgcatgcaaaaaaatacatttacgtgagttaactcacgctcgactattttgacgggaatgagaaaaaacagatgggagaagaacaatt 22842150  T
Q  129 a 129  Q
    |    
T  22842149 a 22842149  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 38006564 - 38006615
Alignment:
Q  70 ttaactcacgctcgactatttga-cggaaatgagcaaaaacagatgggagaa 120  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||||||||||    
T  38006564 ttaactcacgctcgactattttaacgggaatgagcaaaaacagatgggagaa 38006615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 33102110 - 33102173
Alignment:
Q  68 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaaaaacaattag 130  Q
    |||||||||||||||| |||||| ||||| |||||||||||||||||  ||||| | |||||||    
T  33102110 agttaactcacgctcggctattttgacgggaatgagcaaaaacagataagagaagagcaattag 33102173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 12750218 - 12750156
Alignment:
Q  68 agttaactcacgctcgactatttg-acggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||||||||||| ||||||| ||||  ||||| ||||||||||||||||| | ||||||    
T  12750218 agttaactcacgctcggctatttggacggggatgaggaaaaacagatgggagaagagcaatta 12750156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 37442613 - 37442674
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| |||| | ||||||    
T  37442613 agttaactcacgctcggctatttgacgggaatgagcaaaaacagatggaagaagagcaatta 37442674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 9828241 - 9828181
Alignment:
Q  69 gttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||||| | ||||||    
T  9828241 gttaactcacgctctactatttgacgggaatgagcaaaaccagatgggagaagagcaatta 9828181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 32827080 - 32827141
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||||| | |||||||||||||||||||||||||||| |||| |||||| | ||||||    
T  32827080 agttaactcatgttcgactatttgacggaaatgagcaaaaatagataggagaatagcaatta 32827141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 32303671 - 32303609
Alignment:
Q  68 agttaactcacgctcgacta-tttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||| |||| | ||||||    
T  32303671 agttaactcacgctcgactattttgacgaaaatgagcaaaatcagatggaagaagagcaatta 32303609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 9979677 - 9979738
Alignment:
Q  65 gtaagttaactcacgctcgacta-tttgacggaaatgagcaaaaacagatgggagaaaaaca 125  Q
    ||||||||||||||||||||||| ||||||   ||||| |||||||||||||||||| ||||    
T  9979677 gtaagttaactcacgctcgactattttgacatgaatgaacaaaaacagatgggagaagaaca 9979738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 34594717 - 34594666
Alignment:
Q  69 gttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaa 120  Q
    ||||||||||||||| |||||| |||| |||||| ||||| |||||||||||    
T  34594717 gttaactcacgctcggctatttaacgggaatgagaaaaaaaagatgggagaa 34594666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 15398371 - 15398421
Alignment:
Q  79 gctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||| |||||||||| |||||||||||| ||||||||||| | ||||||    
T  15398371 gctcgattatttgacggtaatgagcaaaaatagatgggagaagagcaatta 15398421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 8055218 - 8055165
Alignment:
Q  68 agttaactcacgctcgacta-tttgacggaaatgagcaaaaacagatgggagaa 120  Q
    |||||||||||||||||||| ||| |||| || |||||||||| ||||||||||    
T  8055218 agttaactcacgctcgactattttaacgggaacgagcaaaaactgatgggagaa 8055165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 36703049 - 36703169
Alignment:
Q  11 tgtttttattcattccagtcctacgtgagttaacgcacgctaaaaaatagt--tatgtaagttaactcacgctcgactatttgacggaaatgagcaaaaa 108  Q
    |||||||  ||||||| ||||||||||||||||  |||||| || ||||    || || | |||||||||||||||| |||| |||||||||| ||||||    
T  36703049 tgtttttgctcattcccgtcctacgtgagttaattcacgctgaagaatacacctacgtgaattaactcacgctcgacaatttaacggaaatgaacaaaaa 36703148  T
Q  109 cagatgggagaaaaacaatta 129  Q
    |||||||||||| ||| ||||    
T  36703149 cagatgggagaagaacgatta 36703169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 20991614 - 20991562
Alignment:
Q  69 gttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 120  Q
    ||||||||||||||| |||||| ||||| |||||||||||  |||||||||||    
T  20991614 gttaactcacgctcggctattttgacgggaatgagcaaaattagatgggagaa 20991562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 35310435 - 35310487
Alignment:
Q  68 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggaga 119  Q
    |||||||||||||||| |||||| |||||  ||||||||||| ||||||||||    
T  35310435 agttaactcacgctcggctattttgacggggatgagcaaaaatagatgggaga 35310487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 39556023 - 39556084
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| ||||||    
T  39556023 agttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaatta 39556084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 43294660 - 43294717
Alignment:
Q  72 aactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  43294660 aactcacgctcaactatttgacggaaatgagtaaaaacagatgagagaagaacaatta 43294717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 13387441 - 13387318
Alignment:
Q  8 atctgtttttattcattccagtcctacgtgagttaacgcacgctaaaaa-atagttatgtaagttaactcacgctcgactattt-gacggaaatgagcaa 105  Q
    |||| ||||| |||||||  ||||||||||||||||| || | | |||| | |  || || |||||||||||||| |||||||| ||||| |||||  ||    
T  13387441 atctatttttgttcattctcgtcctacgtgagttaactcatgatgaaaatacacatacgtgagttaactcacgcttgactattttgacgggaatgaagaa 13387342  T
Q  106 aaacagatgggagaaaaacaatta 129  Q
    ||||||||||||||||||||||||    
T  13387341 aaacagatgggagaaaaacaatta 13387318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 17793935 - 17793874
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||| |||||||||||||| ||||||||||  ||||||| |||| |||| ||||||||    
T  17793935 agttaacttacgctcgactatttaacggaaatgaataaaaacatatggaagaagaacaatta 17793874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 33833456 - 33833517
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    ||||||| |||||||| ||||||||| | |||||| ||||||||||||||||| | ||||||    
T  33833456 agttaacccacgctcggctatttgacaggaatgagtaaaaacagatgggagaagagcaatta 33833517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 8514013 - 8513961
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaa 120  Q
    ||||||||||| ||||| |||||||| | ||||| ||||||||||||||||||    
T  8514013 agttaactcacactcgattatttgacaggaatgaacaaaaacagatgggagaa 8513961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 6620066 - 6620013
Alignment:
Q  68 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 120  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||| ||| |||||    
T  6620066 agttaactcacgctcaactattttgacgggaatgagcaaaaacaaatgagagaa 6620013  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 8514054 - 8514082
Alignment:
Q  92 acggaaatgagcaaaaacagatgggagaa 120  Q
    |||||||||||||||||||||||||||||    
T  8514054 acggaaatgagcaaaaacagatgggagaa 8514082  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 39555931 - 39555979
Alignment:
Q  8 atctgtttttattcattccagtcctacgtgagttaacgcacgctaaaaa 56  Q
    |||||||||| |||||||  |||||||||||||||||  ||||||||||    
T  39555931 atctgtttttgttcattcatgtcctacgtgagttaacttacgctaaaaa 39555979  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 23252889 - 23252957
Alignment:
Q  62 tatgtaagttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    ||||| |||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||| ||||||    
T  23252889 tatgtgagttaactcacgctcggctattttgacgggaatgagcaaaaccagatgggagaaaagcaatta 23252957  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 2725849 - 2725902
Alignment:
Q  68 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 120  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  2725849 agttaactcacgctcggctattttgacgggaatgagcaaaaacagatgggagaa 2725902  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 30841169 - 30841112
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaaca 125  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||| |||||| ||||    
T  30841169 agttagctcacactcgactatttgacggaaatgagtaaaaacagataggagaagaaca 30841112  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 2146792 - 2146731
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||| ||||||||||  ||||||||||||||| |||||||| ||||||||||| | ||||||    
T  2146792 agttcactcacgctctgctatttgacggaaataagcaaaaatagatgggagaagagcaatta 2146731  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 3607063 - 3607117
Alignment:
Q  75 tcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||| ||||||| ||| ||||||||||||| ||||||||||| | ||||||    
T  3607063 tcacgctcaactattttacgaaaatgagcaaaaatagatgggagaagagcaatta 3607117  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 17497670 - 17497609
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||| | ||||| |||||||||| || |||||| ||||||||||||||| | ||||||    
T  17497670 agttaacttatgctcggctatttgacgaaattgagcataaacagatgggagaagagcaatta 17497609  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 20890415 - 20890467
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaa 120  Q
    |||||| ||| ||||||||||||||||  |||||| ||||||| |||||||||    
T  20890415 agttaattcatgctcgactatttgacgagaatgaggaaaaacatatgggagaa 20890467  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 30097525 - 30097447
Alignment:
Q  31 ctacgtgagttaacgcacgctaaaaaatagt-tatgtaagttaactcacgctcgactatttgacggaaatgagcaaaaa 108  Q
    |||||||||||||| |||| |||||||||   |  || ||||||||||||||||||||||||| |||||||||||||||    
T  30097525 ctacgtgagttaacccacgttaaaaaatacactgcgtgagttaactcacgctcgactatttgatggaaatgagcaaaaa 30097447  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 959144 - 959083
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| | ||||||    
T  959144 agttaactgacgctcgattatttaacggaaatgagcaaaaatagatgggagaagagcaatta 959083  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 52450178 - 52450240
Alignment:
Q  68 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||||||||||| |||||| ||||| |||||| ||||||||||||||| ||| ||||||    
T  52450178 agttaactcacgctcggctattttgacgggaatgagtaaaaacagatgggaggaaagcaatta 52450240  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 1845888 - 1845833
Alignment:
Q  66 taagttaactcacgctcgactat-ttgacggaaatgagcaaaaacagatgggagaa 120  Q
    |||||||||||||||| |||||| ||||||| |||||| |||||||||| ||||||    
T  1845888 taagttaactcacgcttgactatattgacgggaatgagaaaaaacagataggagaa 1845833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 24393670 - 24393619
Alignment:
Q  70 ttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 120  Q
    ||||||||||||| ||||||| || || ||||||||||||||||||||||||    
T  24393670 ttaactcacgctcaactattttgatgggaatgagcaaaaacagatgggagaa 24393619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 37688863 - 37688820
Alignment:
Q  86 tatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||    
T  37688863 tatttaacggaaatgaacaaaaacagatgggagaagaacaatta 37688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 8434238 - 8434299
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    ||||||| ||||||||  |||||||| |||||||||||||| ||||| ||||| | ||||||    
T  8434238 agttaacgcacgctcggttatttgacagaaatgagcaaaaaaagatgagagaagagcaatta 8434299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 33648262 - 33648209
Alignment:
Q  68 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 120  Q
    ||||||||||| ||||||||||| ||||| |||||||||||| | |||||||||    
T  33648262 agttaactcacactcgactattttgacgggaatgagcaaaaatatatgggagaa 33648209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 23253 - 23192
Alignment:
Q  68 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||| ||||||||||  ||||||||||||||| |||||||| ||||||||||| | ||||||    
T  23253 agttcactcacgctctgctatttgacggaaataagcaaaaatagatgggagaagagcaatta 23192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 14210664 - 14210605
Alignment:
Q  69 gttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 129  Q
    |||||||||| |||||||||||||||| ||||||| |||| ||||||||||| | ||||||    
T  14210664 gttaactcacactcgactatttgacgggaatgagc-aaaatagatgggagaagatcaatta 14210605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 21322574 - 21322627
Alignment:
Q  68 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 120  Q
    ||||||||||| |||| |||||| ||||| | ||||||||||||||||||||||    
T  21322574 agttaactcaccctcggctattttgacgggattgagcaaaaacagatgggagaa 21322627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 29855986 - 29855941
Alignment:
Q  72 aactcacgctcgactattt-gacggaaatgagcaaaaacagatggg 116  Q
    ||||||||||||||||||| || || ||||||||||||||||||||    
T  29855986 aactcacgctcgactattttgatgggaatgagcaaaaacagatggg 29855941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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