View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1704_low_13 (Length: 398)

Name: NF1704_low_13
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1704_low_13
NF1704_low_13
[»] chr5 (9 HSPs)
chr5 (18-271)||(19805751-19806005)
chr5 (272-396)||(19806735-19806859)
chr5 (41-209)||(19970009-19970177)
chr5 (343-397)||(13712283-13712337)
chr5 (41-99)||(1348343-1348401)
chr5 (344-397)||(19969676-19969729)
chr5 (354-395)||(1348047-1348088)
chr5 (43-103)||(26535614-26535674)
chr5 (43-81)||(13712824-13712862)
[»] chr3 (6 HSPs)
chr3 (345-398)||(24890843-24890896)
chr3 (35-93)||(32225896-32225954)
chr3 (321-396)||(32242140-32242215)
chr3 (345-398)||(24912761-24912814)
chr3 (23-92)||(32225358-32225427)
chr3 (342-394)||(32226456-32226508)
[»] chr6 (2 HSPs)
chr6 (321-395)||(16258561-16258635)
chr6 (41-94)||(31088865-31088918)
[»] chr1 (1 HSPs)
chr1 (41-78)||(26053732-26053769)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 19805751 - 19806005
Alignment:
Q  18 taatattcatttggaaaatatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgttaaaacaacaaccaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19805751 taatattcatttggaaaatatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgttaaaacaacaaccaat 19805850  T
Q  118 gttacaacgggagggaactttaaatccttatccaagttgaacaatgctgatataagattattcgaccttccgttcagagcaatttataatgtccgatttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19805851 gttacaacgggagggaactttaaatccttatccaagttgaacaatgctgatataagattattcgaccttccgttcagagcaatttataatgtccgatttc 19805950  T
Q  218 taagtgtacacgaggtatgatac-tttatcgtcaatattatatgagctaaatttt 271  Q
    || ||||||| |||||||||||| |||||| ||||||||||||||||| ||||||    
T  19805951 tacgtgtacatgaggtatgatacttttatcatcaatattatatgagcttaatttt 19806005  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 272 - 396
Target Start/End: Original strand, 19806735 - 19806859
Alignment:
Q  272 gatacattaagtcaaatattttcatttcgactaatcttatgtgtgactttgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaag 371  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19806735 gatacattaagtcaaatattttcatttcgactaaccttatgtgtgactttgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaag 19806834  T
Q  372 gctttccagtgtttgaaaacttaac 396  Q
    ||||| | |||||||||||||||||    
T  19806835 gcttttccgtgtttgaaaacttaac 19806859  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 19970177 - 19970009
Alignment:
Q  41 aggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgttaaaacaacaaccaatgttacaacgggagggaactttaa 140  Q
    ||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||| || |||| |  |||   || |||||||| |||||||| | |||||    
T  19970177 aggatctcatgaaacttttttcggggtgtcccatgttggagaatttgaaaactatatgtgttgatgcaaatgccgatgttacagcgggagggtattttaa 19970078  T
Q  141 atccttatccaagttgaacaatgctgatataagattattcgaccttccgttcagagcaatttataatgt 209  Q
    | |||||||||| |||| |||||| ||||| |  ||||||||  ||||| | |||||| ||||||||||    
T  19970077 acccttatccaaattgatcaatgcagatatcaatttattcgaagttccgcttagagcagtttataatgt 19970009  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 13712337 - 13712283
Alignment:
Q  343 caatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaacc 397  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  13712337 caatgaagaaatcaattcatattacaaaggctttcctgtgtttgaaaacttaacc 13712283  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 1348401 - 1348343
Alignment:
Q  41 aggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatat 99  Q
    ||||| ||||||||||||| |||||||||||   |||||||||||||||||||||||||    
T  1348401 aggatctcatgaaacttctgtctgggtgtcctcaattggagaatttgaaaactagatat 1348343  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 19969729 - 19969676
Alignment:
Q  344 aatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaacc 397  Q
    |||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  19969729 aatgcagaaatcaattcatattacaaagactttccagtgtttggaaacttaacc 19969676  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 1348088 - 1348047
Alignment:
Q  354 tcaatttatattacaaaggctttccagtgtttgaaaacttaa 395  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  1348088 tcaattcatattacaaaggctttcccgtgtttgaaaacttaa 1348047  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 26535614 - 26535674
Alignment:
Q  43 gatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgtta 103  Q
    ||||||||||||||| ||| ||||||||||| ||||||| ||||||  |||| ||||||||    
T  26535614 gatttcatgaaacttgtttatgggtgtcccaaattggaggatttgagtactatatatgtta 26535674  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 13712862 - 13712824
Alignment:
Q  43 gatttcatgaaacttctttctgggtgtcccatattggag 81  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  13712862 gatttcatgaaccttctctctgggtgtcccatattggag 13712824  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 24890843 - 24890896
Alignment:
Q  345 atgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccg 398  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  24890843 atgaagaaatcaattcatattacaaaggttttcctgtgtttgaaaacttaaccg 24890896  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 32225896 - 32225954
Alignment:
Q  35 atatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaact 93  Q
    ||||||||||||| | ||||||| | ||||||||||||||||| ||| |||||||||||    
T  32225896 atatcgaggatttaaagaaacttatatctgggtgtcccatattagaggatttgaaaact 32225954  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 32242215 - 32242140
Alignment:
Q  321 tgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaac 396  Q
    ||||||||| || || |||  ||||| |||||||||||| ||||||| |||||| ||  |||||||||||||||||    
T  32242215 tgcagatggggaaaagtctccccaatcaagaaatcaattcatattaccaaggctatcatgtgtttgaaaacttaac 32242140  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 24912761 - 24912814
Alignment:
Q  345 atgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccg 398  Q
    ||||||||||||||| |||||| ||||| |||||  |||||||||||| |||||    
T  24912761 atgaagaaatcaattcatattataaaggttttcctatgtttgaaaactgaaccg 24912814  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 32225427 - 32225358
Alignment:
Q  23 ttcatttggaaaatatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaac 92  Q
    ||||||||||  ||||||||||||| | ||||||| | |||| || ||||||||| ||| ||||||||||    
T  32225427 ttcatttggatgatatcgaggatttaaagaaacttatatctgagtttcccatattagaggatttgaaaac 32225358  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 32226456 - 32226508
Alignment:
Q  342 ccaatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaactta 394  Q
    ||||| |||||||||||| ||||||| |||||| ||  |||||||||||||||    
T  32226456 ccaatcaagaaatcaattcatattaccaaggctatcatgtgtttgaaaactta 32226508  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 395
Target Start/End: Complemental strand, 16258635 - 16258561
Alignment:
Q  321 tgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaa 395  Q
    ||||||||| || || |||  ||||| |||||||||||| ||||||| ||||||  || ||||||||||||||||    
T  16258635 tgcagatggggaaaagtctccccaatcaagaaatcaattcatattaccaaggctgccctgtgtttgaaaacttaa 16258561  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 31088865 - 31088918
Alignment:
Q  41 aggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaacta 94  Q
    ||||||||||||||||| | ||||||||||||  ||||||| ||| ||||||||    
T  31088865 aggatttcatgaaacttatctctgggtgtcccgaattggaggattggaaaacta 31088918  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 26053769 - 26053732
Alignment:
Q  41 aggatttcatgaaacttctttctgggtgtcccatattg 78  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  26053769 aggatttcatgaaacttctttttgggtgtcccaaattg 26053732  T

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