View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_18 (Length: 371)
Name: NF1704_low_18
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 2 - 369
Target Start/End: Complemental strand, 7178111 - 7177744
Alignment:
| Q |
2 |
ttctattttatcctttgattctatcttggtgtagccttctggaagtaagtgatttacaacttctgtcactgatcgtaatttcttaccagtagcggtacca |
101 |
Q |
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| T |
7178111 |
ttctattttatcctttgattctatcttggtgtagccttctggaagtaagtgatttacaacttctgtcactgatcgtaatttcttaccagtagtggtacca |
7178012 |
T |
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| Q |
102 |
tgagtatagtacttcatgaaagnnnnnnnnnnnnnnnnnnntgaagataaatgagtgttattaacattgacaaatatatactatctatcatataattata |
201 |
Q |
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| T |
7178011 |
tgagtatagtacttcatgaaagaaaaacaaaacaaaaaaaatgaagataaatgagtgttgttaacattgacaaatatatactatctatcatataattata |
7177912 |
T |
|
| Q |
202 |
taaaaatacactgaagaaattatttttaccgtatctaatgttcccgaacttctttttctacattctacctcccattgatgaagatttgatgataaatttt |
301 |
Q |
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| T |
7177911 |
tgaaaatacactaaagaaattatttttaccgtatctaatgttcccgaacttctttttctacattctacctcccattgatgaagatttgatgataaatttt |
7177812 |
T |
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| Q |
302 |
ctgtgtttgggaaagtcattgcatctattggaaagtgaaatgatataatctcctttctgatcaatatt |
369 |
Q |
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| T |
7177811 |
ctgtgtttgggaaagtcgttgcatctattggaaagtgaaatgatataatctcctttctgatcaatatt |
7177744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 215 - 356
Target Start/End: Complemental strand, 7167933 - 7167792
Alignment:
| Q |
215 |
aagaaattatttttaccgtatctaatgttcccgaacttctttttctacattctacctcccattgatgaagatttgatgataaattttctgtgtttgggaa |
314 |
Q |
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| T |
7167933 |
aagaaattaattttacccaatcaaattttcccgaagttctttttctacattgtacctcccattgatcaagatttgatgataaactttctgtatttgggaa |
7167834 |
T |
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| Q |
315 |
agtcattgcatctattggaaagtgaaatgatataatctcctt |
356 |
Q |
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| T |
7167833 |
agtcgttgcatctattggaaagtaaaatgatataatctcctt |
7167792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 7168117 - 7168010
Alignment:
| Q |
7 |
ttttatcctttgattctatcttggtgtagccttctggaagtaagtgatttacaacttctgtcactgatcgtaatttcttaccagtagcggtaccatgagt |
106 |
Q |
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|||| |||||||| |||| | ||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||||| ||| |||| |||||| |
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| T |
7168117 |
ttttttcctttgaatctaacatggtgtagccttccggaagtaagtgatttacaacttccttaactgatcgtaattgcttaccactagtggtatcatgagc |
7168018 |
T |
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| Q |
107 |
atagtact |
114 |
Q |
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||| |||| |
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| T |
7168017 |
ataatact |
7168010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 6768154 - 6768197
Alignment:
| Q |
46 |
gtaagtgatttacaacttctgtcactgatcgtaatttcttacca |
89 |
Q |
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| T |
6768154 |
gtaagtgatttacaacttccttaactgatcgtaatttcttacca |
6768197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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