View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_19 (Length: 370)
Name: NF1704_low_19
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 356
Target Start/End: Complemental strand, 33804549 - 33804205
Alignment:
| Q |
12 |
atgaacgtggatctcacttaatacgagtttcattcgtatgaggtgaaaactctttcctcaaaattgaaagacttgccataatttcgtatgagtgaatatg |
111 |
Q |
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| T |
33804549 |
atgaacgtggatctcacttaatacgagtttcattcgtatgaggtgaaaactctttcctcaaaattgaaagacttgccataatttcgtatgagtgaatatg |
33804450 |
T |
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| Q |
112 |
ctgctaatactcctgctttatttaattcaggtcgtctagggtatactatattttagtttaatttatcgttacatcctaggtcataccaaataaagtgtct |
211 |
Q |
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| T |
33804449 |
ctgctaatactcctgctttatttaattcaggtcgtctcgggtatactatattttagtttaatttatcgttacatcctaggtcataccaaataaagtgtct |
33804350 |
T |
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| Q |
212 |
tcgatnnnnnnnnnntatattaagctgataatttaccatctaacaacaattatcttctcctnnnnnnncacaattatcttgtccattcactcttcatata |
311 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33804349 |
tcgataaaaaaaaaaaatattaagctgataatttaccatctaacaacaattatcttctcctaaaaaaacacaattatcttgtccattcactcttcatata |
33804250 |
T |
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| Q |
312 |
ggtcacgtacattgcacctgtgaaatacacaggtttgattaatct |
356 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33804249 |
ggtcaggtacattgcacctgtgaaatacacaggtttgattaatct |
33804205 |
T |
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