View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1704_low_20 (Length: 368)
Name: NF1704_low_20
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 78 - 352
Target Start/End: Complemental strand, 24622991 - 24622723
Alignment:
| Q |
78 |
agggtgtttttatcatttgaaaacaataaaatttgtggaattttagttttacgaccgtgcaccattcccagacttaaaaaacattcatttttatgtc-tc |
176 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24622991 |
agggtgtttttatcatttgaatacaataaaatttgtggaattttagttttacgaccgtgcaccattcccagacttaaaaaacattcatttttatgtcttc |
24622892 |
T |
|
| Q |
177 |
ataaagttcctaagatgtataataaggtcccaaactaaccaagttaatgagggagaggtccaattagttgatctagcctctaggggtagttttctaaatc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24622891 |
ataaagttcctaagatgtataataaggtcccaaaataaccaaattaatgagggagaggtccaattagttga-------tctaggggtagttttctaaatc |
24622799 |
T |
|
| Q |
277 |
cacaatgaatttagtacatgaagaaatttaaaagtgttagagatgaactaaggatagacctcaaaaatgaagcaag |
352 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
24622798 |
cacaataaatttaatacatgaagaaatttaaaagtgttagagatgaactaaggatagacgtaaaaaatgaagcaag |
24622723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 43154821 - 43154901
Alignment:
| Q |
130 |
gaccgtgcaccattcccagacttaaaaaacattcatttttatgtctca-taaagttcctaagatgtataataaggtcccaaa |
210 |
Q |
| |
|
||||| ||||| |||| ||||||||||| | ||||||||||| ||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
43154821 |
gaccgcgcacccttccgagacttaaaaat-actcatttttatgcttcaataaggttcctaagatgtataataaggtcccaaa |
43154901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 19220602 - 19220570
Alignment:
| Q |
179 |
aaagttcctaagatgtataataaggtcccaaac |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
19220602 |
aaagttcctaagatgtatcataaggtcccaaac |
19220570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 18784721 - 18784785
Alignment:
| Q |
255 |
tctaggggtagttttctaaatccacaatgaatttagtacatgaagaaatttaaaagtgttagaga |
319 |
Q |
| |
|
|||| |||||||| ||| ||||| ||||||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
18784721 |
tctaagggtagttatctgaatcctagatgaatttaatacatgaagaagtttaaaagtgctagaga |
18784785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University