View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_21 (Length: 366)
Name: NF1704_low_21
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_21 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 24295989 - 24295674
Alignment:
| Q |
19 |
ataccggtatgtatgtattagcgttgatccttgttttcgtcatggccgtactcattgaattactctcacgtacacggttcattaaacccggttcaaacca |
118 |
Q |
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| T |
24295989 |
ataccggtatgtatgtattagcgttgatccttgttttcgtcatggccgtactcattgaattactctcacgtacacggttcattaaacccggttcaaacca |
24295890 |
T |
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| Q |
119 |
tgttgctgccggtttgtttcagacacttttgcatgttcttagggttgggttagcttatttggttatgttggctcttatgtctttcaatggtggtgtgttt |
218 |
Q |
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| T |
24295889 |
tgttgctgccggtttgtttcagacacttttgcatgttcttagggttgggttagcttatttggttatgttggctcttatgtctttcaatggtggtgtgttt |
24295790 |
T |
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| Q |
219 |
ttggttgctgtgcttggtcatgctcttggattcttcttatgtagcagtgcttttaggaaaccaaaacaacatgatgaggcttatgatcttcctccgttgt |
318 |
Q |
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| T |
24295789 |
ttggttgctgtgcttggtcatgctcttggattcttcttatgtagcagtgcttttaggaaaccaaaacaacatgatgaggcttatgatcttcctccgttgt |
24295690 |
T |
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| Q |
319 |
cttgttaattgtttct |
334 |
Q |
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| T |
24295689 |
cttgttaattgtttct |
24295674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 24 - 328
Target Start/End: Complemental strand, 24511257 - 24510956
Alignment:
| Q |
24 |
ggtatgtatgtattagcgttgatccttgttttcgtcatggccgtactcattgaattactctcacgtacacggttcattaaacccggttcaaaccatgttg |
123 |
Q |
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| T |
24511257 |
ggtaagtatgtattggccttgatccttgttttcgccatgtccatactcatcgagtttctctcaagcacccggttcattaaacccggttcaaaccctattg |
24511158 |
T |
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| Q |
124 |
ctgccggtttgtttcagacacttttgcatgttcttagggttgggttagcttatttggttatgttggctcttatgtctttcaatggtggtgtgtttttggt |
223 |
Q |
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| T |
24511157 |
tggccggtctagttcagacccttctgcatgtccttagggttggcctagcttatttggttatgttggctctcatgtctttcaatggtggagtgttcttggt |
24511058 |
T |
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| Q |
224 |
tgctgtgcttggtcatgctcttggattcttcttatgtagcagtgcttttaggaaaccaaaacaacatgatgaggcttatgatcttcctccgttgtcttgt |
323 |
Q |
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| T |
24511057 |
tgctgtgcttggtcatgctgttgggttcttctttcgtagccgtgctttcaaaaaacc---acatcaagatgagaatttcgatcttcctccgttatcttgt |
24510961 |
T |
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| Q |
324 |
taatt |
328 |
Q |
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||||| |
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| T |
24510960 |
taatt |
24510956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 136 - 273
Target Start/End: Complemental strand, 24508745 - 24508608
Alignment:
| Q |
136 |
ttcagacacttttgcatgttcttagggttgggttagcttatttggttatgttggctcttatgtctttcaatggtggtgtgtttttggttgctgtgcttgg |
235 |
Q |
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||||||| ||||||||||| ||||||||||| || ||||||||| | |||||||| || ||||||||||||||||| ||||| ||||||| ||| ||||| |
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| T |
24508745 |
ttcagacgcttttgcatgtccttagggttggattggcttatttgatcatgttggcactcatgtctttcaatggtggagtgttcttggttgttgtacttgg |
24508646 |
T |
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| Q |
236 |
tcatgctcttggattcttcttatgtagcagtgctttta |
273 |
Q |
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| T |
24508645 |
tcatgctcttggattcttcgtatgtagccgtgctttta |
24508608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 120186 - 120145
Alignment:
| Q |
177 |
ttggttatgttggctcttatgtctttcaatggtggtgtgttt |
218 |
Q |
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| T |
120186 |
ttggttatgttggctgttatgtcgtttaatggtggtgtgttt |
120145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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