View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_22 (Length: 342)
Name: NF1704_low_22
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 31176099 - 31175790
Alignment:
| Q |
11 |
cacagatagatgtcaacttccactaaacaataagttgagtagaacagacgaacaaataaataactgaacatgcagacaatcaagtaagccaatatgcata |
110 |
Q |
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| T |
31176099 |
cacaaatagatgtcaacatccactaaacaataagttgagtagaacagacgaacaaataaataactgaacatgcagacaattaagtaagccaatatgcata |
31176000 |
T |
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| Q |
111 |
gaagttaggcatataaaaaatatacaacacataaacacgtatttaatgatagaagttacctccaaggaaaaagggaaaccacaccatagttacaaacgaa |
210 |
Q |
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| T |
31175999 |
gaagttaggcatataaaaa-tatacaatgca--aacacatatttaatgatagaagttacctccaaggaaaaagggaaaccacaccatagttacaaacgaa |
31175903 |
T |
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| Q |
211 |
tactcataactgaatgagtgacacaggtacataaggctaaggattggaaacgatattgaaacacaaataccaactaaaccgacactataaatgagagact |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31175902 |
tactcataactgaatgagtgacacaggtacataaggctaaggattggaaacgatattgaaacacaaataccaactaaaccgacactataaatgagagact |
31175803 |
T |
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| Q |
311 |
catacagacaact |
323 |
Q |
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||||||||||||| |
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| T |
31175802 |
catacagacaact |
31175790 |
T |
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