View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_24 (Length: 322)
Name: NF1704_low_24
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_24 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 38645212 - 38644974
Alignment:
| Q |
1 |
ctattaatttcatcagatgctaacaattgatcatatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcac |
100 |
Q |
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| T |
38645212 |
ctattaatttcatcatatgctaaccatcgatcatatcttgcggttatattttgttcctcacatgtgaagtacatgacccctgtctcaccatagcattcac |
38645113 |
T |
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| Q |
101 |
caaaaaggaat------tgttcaaacaagttacaggtgaatcatctttgccgcacaataaataaataatatatctaatggtgcaaactcaatttgcaccg |
194 |
Q |
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| T |
38645112 |
caaaaagggatacttattgttcaaacaagttacaggtgaatcatcttgaccgcacaataaataattaatatatctaatggtgcaaactcaatttgcaccg |
38645013 |
T |
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| Q |
195 |
tgagagacctgttttgatcggtcacgctagcctccgccc |
233 |
Q |
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| T |
38645012 |
tgagagacctgttttggtcgctcacgctagcctccgccc |
38644974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 13610254 - 13610029
Alignment:
| Q |
1 |
ctattaatttcatcagatgctaacaattgatcatatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcac |
100 |
Q |
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| T |
13610254 |
ctattaatttcatcagaagctaacaattgatcatatcttgcggttatattttgtt-ctcacatgtgaactacatgacccctacctcaccatagcattcac |
13610156 |
T |
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| Q |
101 |
caaaaaggaattgttcaaacaagttacaggtgaatcatctttgccgcacaataaataaataatatatctaatggtgcaaactcaatttgcaccgtgagag |
200 |
Q |
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| T |
13610155 |
caaaatgggatactt-----attcttcaaaagaatcatcttgaccacataataaataattaatatatccaatggtgaaaattcaatttgcactgtgagag |
13610061 |
T |
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| Q |
201 |
acctgttttgatcggtcacgctagcctccgcc |
232 |
Q |
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| T |
13610060 |
acctgttttggtcgctcacgctagcctccgcc |
13610029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 33641735 - 33641507
Alignment:
| Q |
1 |
ctattaatttcatcagatgctaacaattgatcatatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcac |
100 |
Q |
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| T |
33641735 |
ctattaatttcatcagaagctaacaattgatcatatcttgcggttatattttgtt-ctcacatgtgaagtacatgacccctgcctcaccatagcattcac |
33641637 |
T |
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| Q |
101 |
caaaaaggaattgttcaaacaagttacaggtgaatcatctttgccgcacaataaataaataatatatctaatggtgcaaactcaatttgcaccgtgagag |
200 |
Q |
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| T |
33641636 |
ccaaatgggatactt-----attcttcaaaagaatcatcttgaccacataataaataattaatatatccaatggtgaaaattcaatttgcatcgtgagag |
33641542 |
T |
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| Q |
201 |
acctgttttgatcggtcacgctagcctccgcccat |
235 |
Q |
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| T |
33641541 |
acctgttttggtcgctcacgctggcctccgcccat |
33641507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 54131400 - 54131172
Alignment:
| Q |
1 |
ctattaatttcatcagatgctaacaattgatcatatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcac |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
54131400 |
ctattaatttcatcagaagctaacaattgatcatatcttgcggttatattttgtt-ctcacatgtgaattacatgacccctacctcaccatagcattcac |
54131302 |
T |
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| Q |
101 |
caaaaaggaattgttcaaacaagttacaggtgaatcatctttgccgcacaataaataaataatatatctaatggtgcaaactcaatttgcaccgtgagag |
200 |
Q |
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| T |
54131301 |
caaaatgggatactt-----attcttcaaaagaatcatcttgaccacataataaataattaatatatccaatggtgaaaattcaatttgcaccgtgagag |
54131207 |
T |
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| Q |
201 |
acctgttttgatcggtcacgctagcctccgcccat |
235 |
Q |
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| T |
54131206 |
atctgttttggtcgctcacgctagcctccgcccat |
54131172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 4773936 - 4773880
Alignment:
| Q |
266 |
aacacgggcctaaacagacttaatggatcactataccaaaagacctttgcattattg |
322 |
Q |
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| T |
4773936 |
aacacgggcctaaacagacttaatggatcactataccaaaagacctttgcattattg |
4773880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 4774242 - 4774199
Alignment:
| Q |
231 |
cccatctaaacatcaccaaaacacaacaaaacttaaacacgggc |
274 |
Q |
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| T |
4774242 |
cccatctaaacatcaccaaaacacaacaaaacttaaacacgggc |
4774199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 322
Target Start/End: Original strand, 8812680 - 8812753
Alignment:
| Q |
249 |
aaacacaacaaaacttaaacacgggcctaaacagacttaatggatcactataccaaaagacctttgcattattg |
322 |
Q |
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||||||||||||||| || ||| ||||| |||| |||||||| ||| || | |||||||||||||||||||||| |
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| T |
8812680 |
aaacacaacaaaactgaagcacaggcctgaacaaacttaatgaatcgctgtcccaaaagacctttgcattattg |
8812753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 5969379 - 5969429
Alignment:
| Q |
160 |
taatatatctaatggtgcaaactcaatttgcaccgtgagagacctgttttg |
210 |
Q |
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| T |
5969379 |
taatatatctaatggtgaaaaatcaatttggaccgtgagagacatgttttg |
5969429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 46089686 - 46089728
Alignment:
| Q |
160 |
taatatatctaatggtgcaaactcaatttgcaccgtgagagac |
202 |
Q |
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| T |
46089686 |
taatatatctagtggtgaaaaatcaatttgcaccgtgagagac |
46089728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 23508368 - 23508471
Alignment:
| Q |
4 |
ttaatttcatcagatgctaacaattgatcatatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcaccaa |
103 |
Q |
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| T |
23508368 |
ttaatttcctcagatcatgaccattgatcatatctcacggttatattttgttcatcacaagtgaagtactttacccctacctcaccatagcattcaccaa |
23508467 |
T |
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| Q |
104 |
aaag |
107 |
Q |
| |
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|||| |
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| T |
23508468 |
aaag |
23508471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 30731244 - 30731181
Alignment:
| Q |
147 |
cacaataaataaataatatatctaatggtgcaaactcaatttgcaccgtgagagacctgttttg |
210 |
Q |
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|||||||| | | ||||||||||||||| | ||| |||||||||||||||| |||| ||||||| |
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| T |
30731244 |
cacaataatttattaatatatctaatggcgaaaaatcaatttgcaccgtgaaagacatgttttg |
30731181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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