View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_25 (Length: 318)
Name: NF1704_low_25
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 30386071 - 30385773
Alignment:
| Q |
1 |
caaaattaaaactctccatagaacgaataagctcattaagcacatgcacatctttggaatttgaattggacaaaggtgacataggtggtgaatttgaaga |
100 |
Q |
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| T |
30386071 |
caaaattaaaactctccatagaacgaataagctcattaagcacatgcacatctttggaatttgaattggacaaaggtgacaaaggtggtgaatttgaaga |
30385972 |
T |
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| Q |
101 |
agaaaaatggggcccacttaacaaagtagaagtgggtgaagaagaatttgagcagcaatgacagaaagaacaacannnnnnnnnnnnnnnnngaggaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
30385971 |
agaaaaatggggcccacttaacaaagtagaagtgggtgaagaagaatttgaacagcaatgacagaaagaacaacattttttgttgtttttttgaggaggt |
30385872 |
T |
|
| Q |
201 |
gtaggagaaggagaaaggggtggtaaaagcaaaactctaagttgacgaggtgtatgagcnnnnnnncaaatttttcgcttacaatttttaccatcttta |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30385871 |
gtaggagaaggagaaaggggtggtaaaagcaaaactctaagttgacgaggtgtatgagcaaaaaaacaaatttttcgcttacaatttttaccatcttta |
30385773 |
T |
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