View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1704_low_26 (Length: 315)
Name: NF1704_low_26
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 2712995 - 2712700
Alignment:
| Q |
18 |
agtttatatgataacttaattatttatctaacgtaatgaacaagaaaaatcacatcactaaacataacaacaatatattgcatcagtgcaagtagaaaag |
117 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2712995 |
agtttatatgataacttaattacttacctaacgtaatgaacaagaaaaatcacatcactaaacataacaacaatatattgcatcagtgcaagtagaaaag |
2712896 |
T |
|
| Q |
118 |
cgattatacattacatcacaacaagaatgcaaacagaaaaaacgattatgtaacacgcttttgaataat--------nnnnnnnnntcgagaaattaaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2712895 |
cgattatacattacatcacaacaagaatgcaaacagaaaaaacgattatgtaacacgcttttgaataataaaaaaaaaaaaaaaaatcgagaaattaaaa |
2712796 |
T |
|
| Q |
210 |
tgtgatcatcggaaagcagagcgaaaacagaaaacgcgcatggaatgaagaaatagaaacacggaaagtaaattacctgattattgcggttctctg |
305 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
2712795 |
tgtgatcatcggaaagcagagtgaaaacagaaaacgcgcatggaatgaagaaatagaaacacagaaagtaaattacctgattattacggttctctg |
2712700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University