View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_27 (Length: 310)
Name: NF1704_low_27
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 9082515 - 9082240
Alignment:
| Q |
17 |
tgcatatcgggtgcatcaatcacttccaaatataagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgtttctgnnnnnnnnggatt |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9082515 |
tgcatatcgcgtgcatcaatcacttccaaatataagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgtttct-----tttaggatt |
9082421 |
T |
|
| Q |
117 |
cagctactatatatgatgaagaaaaattccattaatttaactctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgttgct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9082420 |
cagctactatatatgatgaagaaaaattccattaatttaactctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgttgct |
9082321 |
T |
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| Q |
217 |
aatagtgttcattcaaattatttatagcacaatttatttatttctaattcaagtattatgtttggtcttcatatatttatt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9082320 |
aatagtgttcattcaaattatttatagcacaatttatttatttctaattcaagtattatgtttggtcttcatatatttatt |
9082240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 32664657 - 32664932
Alignment:
| Q |
17 |
tgcatatcgggtgcatcaatcacttccaaatataagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgtttctgnnnnnnnnggatt |
116 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
32664657 |
tgcatatcgcgtgcatcaatcacttccaaatataagtctcatttgtattgcaacttgatgctgtaattttttaagtttctgtttct-----tttaggatt |
32664751 |
T |
|
| Q |
117 |
cagctactatatatgatgaagaaaaattccattaatttaa-ctctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgttgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32664752 |
cagctactatatatgatgaagaaaaattccattaatttaaactctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgttgc |
32664851 |
T |
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| Q |
216 |
taatagtgttcattcaaattatttatagcacaatttatttatttctaattcaagtattatgtttggtcttcatatatttat |
296 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32664852 |
taatagtgttcattcaaattatttatagcataatttatttatttctaattcaagtattatgtttggtcttcatatatttat |
32664932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 6413711 - 6413440
Alignment:
| Q |
20 |
atatcgggtgcatcaatcacttccaaatataagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgtttctgnnnnnnnnggattcag |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
6413711 |
atatcgcgtgcatcaatcacttccaaatataagtctcatttgtagtgcaacttgatgctgtactttttaaagtttctgtttct-----tttaggattcag |
6413617 |
T |
|
| Q |
120 |
ctactatatatgatgaagaaaaattccattaatttaactctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgttgctaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6413616 |
ctactatatatgatgaagaaaaattccattaatttaactctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgttgctaat |
6413517 |
T |
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| Q |
220 |
agtgttcattcaaattatttatagcacaatttatttatttctaattcaagtattatgtttggtcttcatatatttat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6413516 |
agtgttcattcaaattatttatagcacaatttatttatttctaattcaagtattatgtttggtcttcatatatttat |
6413440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 128 - 297
Target Start/End: Complemental strand, 26292382 - 26292206
Alignment:
| Q |
128 |
tatgatgaagaaaaattccattaatttaactctcta-------ccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgttgctaata |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
26292382 |
tatgatgaagaaaaattccattaatttaactctctagtctctaccatgtcaaaggaatgagcaagtttggtacaattttaaaacccatatgttgctgata |
26292283 |
T |
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| Q |
221 |
gtgttcattcaaattatttatagcacaatttatttatttctaattcaagtattatgtttggtcttcatatatttatt |
297 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26292282 |
gtgttcattcagattgtttatagcacaatttatttatttctaattcaagtattatgtttggtcatcatatatttatt |
26292206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 26292562 - 26292511
Alignment:
| Q |
49 |
taagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26292562 |
taagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgttt |
26292511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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