View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_3 (Length: 529)
Name: NF1704_low_3
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 52348923 - 52348408
Alignment:
| Q |
1 |
tatagttgttatagagaaaatgaaaatgaccacaaatttt-gttctgccttgctcttactattctattgcgttttatattctttagttctcataataggn |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52348923 |
tatagttgttatagagaaaatgaaaatgaccacaaatttttgttctgccctgctcttactattctattgcgttttatattctttagttctcataatagca |
52348824 |
T |
|
| Q |
100 |
nnnnnnnn--tgtacattattgtatatgtatattatttatacacagtactatcaagagc-ggaagagtataagagtttactccagacacaatgcatcaga |
196 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52348823 |
aaaaaaaaaatgtacattattgtatatgtatattatttatacacagtactatcaagagcaggaagagtataagagtttactccagacacaatgcatcaga |
52348724 |
T |
|
| Q |
197 |
gtttctacagggatggatctatgaagtaggaagaaagtagctaatttattttcacattgtaactttagtgcaagaattgtaacttttaatcatgttgatg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52348723 |
gtttctacagggatggatctatgaagtaggaagaaagtagctattttattttcacattgtaactttagtgcaagaattgtaacttttaatcatgttgatg |
52348624 |
T |
|
| Q |
297 |
aagtaatgattaatccaattaatctgtacattatgatgaggtgttttctaacatactagtattgatggagtaattattataccactcaaagttaaaagca |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52348623 |
aagtaatgattaatccaattaatctgtacattatgatgaggtattttctaacatactagtattgatggagtaattattataccactcaaagttaaaagca |
52348524 |
T |
|
| Q |
397 |
ttttcgattgatacaattgcaagacagattcatatcaaacaaaccaacagaagatgctgggctggttggttgttgattgatgattaccaaaataaacagg |
496 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52348523 |
ttttcgattgatacaattgcaagacagattcatatcagacaaaccaacagaagatgc---------tggttgttgattgatgattaccaaaataaacagg |
52348433 |
T |
|
| Q |
497 |
tttagagcagaaaaataataatatc |
521 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
52348432 |
tttagagcagaaaaataataatatc |
52348408 |
T |
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