View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_30 (Length: 295)
Name: NF1704_low_30
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 51766552 - 51766824
Alignment:
| Q |
1 |
tagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttctgttacaatacatgtacagtatatatacttagatgtgcct |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51766552 |
tagtggtggatgtacagcttattgcattagttaggcttaac--tatatatcttccacttctgttacaatacatgtacagtatatatacttaggtgtgcct |
51766649 |
T |
|
| Q |
101 |
cactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgttttaataggattcttacttgatagtatattgccatatgaccat |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51766650 |
cactattctacttactcaataatgaaaattactttccatttattcaaagctaagtgttttaatatgattcttacttgatagtatattgccatatgaccat |
51766749 |
T |
|
| Q |
201 |
atcaacaactcaaccaaatcattagtattttcatttgcttcattgccaagactcagtcccaattattaaaatgat |
275 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51766750 |
atcaacaactcaaccaaatcattagtattttcatttgcttcattgccaagactcagtcccaattattaaaatgat |
51766824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 19738840 - 19739001
Alignment:
| Q |
1 |
tagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttctgttacaatacatgtacagtatatatacttagatgtgcct |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
19738840 |
tagtggtggccgtacagcttattgcattagttaggcttaac--tatacatcttccacttctgttacaatgcatgtacggtatatatacttagatgtgcct |
19738937 |
T |
|
| Q |
101 |
cactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgttttaata |
164 |
Q |
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|||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
19738938 |
cactattctaatcactcaataatgaaaattactttccatttattcaaagttcagtgttttaata |
19739001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 19743490 - 19743651
Alignment:
| Q |
1 |
tagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttctgttacaatacatgtacagtatatatacttagatgtgcct |
100 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19743490 |
tagtgatggctgtacagcttattgcattagttaggcttaac--tatacatcttccacttctgttacaatacatgtacagtatatatacttagatgtgcct |
19743587 |
T |
|
| Q |
101 |
cactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgttttaata |
164 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||||| ||||||||||||| | |||||||||||| |
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|
| T |
19743588 |
cactattctaatcactcaataataaaaattactttccatttattcaaagtttagtgttttaata |
19743651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 11335540 - 11335701
Alignment:
| Q |
1 |
tagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttctgttacaatacatgtacagtatatatacttagatgtgcct |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11335540 |
tagtggtggttgtacagcttattgcattagttaggcttaac--tatatatcttccacttctgttacaatacatgtacagtatatatatttagatgtgcct |
11335637 |
T |
|
| Q |
101 |
cactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgttttaata |
164 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
11335638 |
cactattctaatcactcaataatgaaaattactttccatttattcaaagttcagtgttttaata |
11335701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 19479370 - 19479531
Alignment:
| Q |
1 |
tagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttctgttacaatacatgtacagtatatatacttagatgtgcct |
100 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19479370 |
tagtggtggttgtacagcttattccattagttaggcttaac--tatatattttccacttctgttacaatacatgtaaagtatatatacttagatgtgcct |
19479467 |
T |
|
| Q |
101 |
cactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgttttaata |
164 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
19479468 |
cactattctaatcactcaataatgaaaattactttccatttattcaaagttcagtgttttaata |
19479531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 19484000 - 19484161
Alignment:
| Q |
1 |
tagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttctgttacaatacatgtacagtatatatacttagatgtgcct |
100 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
19484000 |
tagtggtggctgtacagcttattgcattagttaggcttaac--tatatatcttccacttctgttacaatacatgtaaagtatataaacttagatgtgcct |
19484097 |
T |
|
| Q |
101 |
cactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgttttaata |
164 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| |||||||||| || |||| ||||||||| |
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|
| T |
19484098 |
cactattctaatcactcaataatgaaaattactttccatttattcagagttcagagttttaata |
19484161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 11337902 - 11338064
Alignment:
| Q |
1 |
tagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttctgttacaatacatgtacagtatatatacttagatgtg-cc |
99 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
11337902 |
tagtggtggttgtacaacttattgcattagttagacttaac--tatatatcttccacttctgttgcaatacatgtacagtatatatacttagatgtgccc |
11337999 |
T |
|
| Q |
100 |
tcactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgttttaata |
164 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| || ||||||||||||| |||||||||||||| |
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|
| T |
11338000 |
tcactattctaatcactcaataatgaaaattaccttccatttattcaaagttcagtgttttaata |
11338064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 3279038 - 3278877
Alignment:
| Q |
1 |
tagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttctgttacaatacatgtacagtatatatacttagatgtgcct |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
3279038 |
tagtggtggttgtacagcttattgcattagttaggcttaac--tatatatcttccacttctgttacaatacatgtaaagtatatacacttagatgtgcct |
3278941 |
T |
|
| Q |
101 |
cactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgttttaata |
164 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
3278940 |
cactattctaatcactcaataatgaaaattactttccatttattcaaagttcagtgttttaata |
3278877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 3277391 - 3277230
Alignment:
| Q |
1 |
tagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttctgttacaatacatgtacagtatatatacttagatgtgcct |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3277391 |
tagtggtggttgtacagcttattgcattagtcaggcttaac--tatatatcttccacttctgttacaatacatgtaaagtatatatacttagatgtgcct |
3277294 |
T |
|
| Q |
101 |
cactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgttttaata |
164 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
3277293 |
cactattctaatcactcaataatgaaaattactttccatttattcaaagttccgtgttttaata |
3277230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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