View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_36 (Length: 267)
Name: NF1704_low_36
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 4234631 - 4234388
Alignment:
| Q |
8 |
ccaagaatataaaatgtaggagtaat--tgtgaatagaaatatttatccgaggtgtcttat--gtttgacctaaaggtatcctttgattagagcaaacac |
103 |
Q |
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| T |
4234631 |
ccaaaaatataaaatgtaggagtaatattgtgaatagaaatatttatccgaggtgtcttatatgtttaacctaaaggtatcctttgattagagcaaacac |
4234532 |
T |
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| Q |
104 |
ttgaattaacatatttagtcaatcattaatgatgattgagaaaataatgatgatactgatatataagccacctgtactatatagaaagagattcaaattt |
203 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
4234531 |
ttgaattaacatatttagtctagcattaatgatgattgagaaaataatgat---actgatatataaaccacctgtattatatagaaagagattcaaattt |
4234435 |
T |
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| Q |
204 |
ttatattgtagattagtaccataataaagttgatcaaacaatacttc |
250 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4234434 |
ttatattgtagattagtaccataataaagttgaccaaacaatacttc |
4234388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 4277179 - 4276930
Alignment:
| Q |
8 |
ccaagaatataaaatgtaggagtaat--tgtgaatagaaatatttatccgag-----gtgtcttatgtttgacctaaaggtatcctttgattagagcaaa |
100 |
Q |
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|||| |||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4277179 |
ccaaaaatataaaatgtaggagtgatattgtgaatagaaatatttatccgagccgaggtgtcttatgtttgacttaaaggtatcctttgattagagcaaa |
4277080 |
T |
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| Q |
101 |
cacttgaattaacatatttagtcaatcattaatgatgattgagaaaataatgatgatactgatatataagccacctgtactatatagaaagagattcaaa |
200 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
4277079 |
cacttgaattaacatatttagtctagcattaatgatgattgagaaaataa---tgatactgatatataaaccacctgtattatatagaaagagattcaaa |
4276983 |
T |
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| Q |
201 |
tttt---tatattgtagattagtaccataataaagttgatcaaacaatacttc |
250 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4276982 |
tttttactatattgtagattagtaccataataaagttgatcaaacaatacttc |
4276930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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