View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1704_low_44 (Length: 246)

Name: NF1704_low_44
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1704_low_44
NF1704_low_44
[»] chr5 (5 HSPs)
chr5 (18-244)||(10050732-10050963)
chr5 (156-230)||(6685889-6685963)
chr5 (160-225)||(9246609-9246674)
chr5 (156-231)||(4195747-4195821)
chr5 (156-231)||(34180899-34180973)
[»] chr7 (8 HSPs)
chr7 (156-231)||(18581948-18582023)
chr7 (156-229)||(19531553-19531626)
chr7 (156-231)||(18343910-18343985)
chr7 (156-231)||(18347439-18347514)
chr7 (155-229)||(42681338-42681411)
chr7 (156-231)||(18344813-18344888)
chr7 (156-231)||(31299699-31299773)
chr7 (156-229)||(42681195-42681267)
[»] chr4 (4 HSPs)
chr4 (156-231)||(1452387-1452462)
chr4 (154-230)||(53051467-53051542)
chr4 (153-225)||(748590-748662)
chr4 (156-228)||(14066299-14066370)
[»] chr3 (2 HSPs)
chr3 (154-229)||(45082746-45082821)
chr3 (156-228)||(30440644-30440715)
[»] chr1 (3 HSPs)
chr1 (151-236)||(395445-395530)
chr1 (154-231)||(28375690-28375766)
chr1 (164-228)||(29529081-29529144)
[»] chr8 (1 HSPs)
chr8 (153-230)||(41264116-41264192)
[»] chr2 (1 HSPs)
chr2 (163-228)||(17955705-17955769)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 10050732 - 10050963
Alignment:
Q  18 agaaattcataattgatgttaaggtcagcaaaagtagatttaaattattaatggaccattaattcattcattatgaacat--taagcaataacgatatca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  10050732 agaaattcataattgatgttaaggtcagcaaaagtagatttaaattattaatggaccattaattcattcattatgaacatattaagcaatgacgatatca 10050831  T
Q  116 ---ctacatgtaataatcaaaaaataatttgggggaataaaaacgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctacca 212  Q
       ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10050832 tcactacaagtaataatcaaaaaataatttgggggaataaaaacgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctacca 10050931  T
Q  213 gctgagctaagacggcttggtgttaaagagtt 244  Q
    ||||||||||||||||||||||||| ||||||    
T  10050932 gctgagctaagacggcttggtgttagagagtt 10050963  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 6685889 - 6685963
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggctt 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6685889 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggctt 6685963  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 9246674 - 9246609
Alignment:
Q  160 gtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagac 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9246674 gtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagac 9246609  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 4195747 - 4195821
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 231  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4195747 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggcttg 4195821  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 34180973 - 34180899
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 231  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  34180973 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggcttg 34180899  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 18581948 - 18582023
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18581948 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 18582023  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 19531626 - 19531553
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19531626 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggct 19531553  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 18343985 - 18343910
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 231  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  18343985 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggcttg 18343910  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 18347514 - 18347439
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 231  Q
    |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  18347514 cgccatctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggcttg 18347439  T

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Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 42681338 - 42681411
Alignment:
Q  155 acgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggct 229  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42681338 acgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggct 42681411  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 18344888 - 18344813
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 231  Q
    |||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  18344888 cgccgtctgtggcaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacgacttg 18344813  T

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Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 31299773 - 31299699
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 231  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  31299773 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggcttg 31299699  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 42681195 - 42681267
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggct 229  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  42681195 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggct 42681267  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 1452387 - 1452462
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1452387 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 1452462  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 53051467 - 53051542
Alignment:
Q  154 aacgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggctt 230  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53051467 aacgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggctt 53051542  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 748662 - 748590
Alignment:
Q  153 aaacgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagac 225  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  748662 aaacgccgtctgtgggaatcaaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagac 748590  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 14066299 - 14066370
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggc 228  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  14066299 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 14066370  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 45082746 - 45082821
Alignment:
Q  154 aacgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggct 229  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  45082746 aacgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 45082821  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 30440715 - 30440644
Alignment:
Q  156 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggc 228  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30440715 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggc 30440644  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 395445 - 395530
Alignment:
Q  151 aaaaacgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttggtgtt 236  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||||||||||| |||||    
T  395445 aaaaacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttagtgtt 395530  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 28375690 - 28375766
Alignment:
Q  154 aacgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 231  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  28375690 aacgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggcttg 28375766  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 29529081 - 29529144
Alignment:
Q  164 gtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggc 228  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  29529081 gtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 29529144  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 41264192 - 41264116
Alignment:
Q  153 aaacgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggctt 230  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  41264192 aaacgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggctt 41264116  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 17955769 - 17955705
Alignment:
Q  163 tgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggc 228  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  17955769 tgtggggatcaaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 17955705  T

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