View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1704_low_5 (Length: 494)

Name: NF1704_low_5
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1704_low_5
NF1704_low_5
[»] chr1 (7 HSPs)
chr1 (23-478)||(6270195-6270650)
chr1 (198-278)||(43413539-43413620)
chr1 (198-265)||(30389694-30389762)
chr1 (198-276)||(29152995-29153074)
chr1 (198-278)||(36699894-36699975)
chr1 (198-278)||(36715998-36716079)
chr1 (198-278)||(51162001-51162082)
[»] chr7 (2 HSPs)
chr7 (199-276)||(43094518-43094596)
chr7 (198-278)||(9157565-9157646)
[»] chr4 (1 HSPs)
chr4 (209-279)||(16476476-16476547)
[»] chr3 (1 HSPs)
chr3 (199-273)||(47117739-47117814)
[»] chr2 (6 HSPs)
chr2 (198-276)||(21646886-21646965)
chr2 (202-276)||(41670286-41670361)
chr2 (198-278)||(33891838-33891919)
chr2 (198-276)||(5998058-5998137)
chr2 (198-238)||(7634595-7634635)
chr2 (198-273)||(42460859-42460935)
[»] chr5 (5 HSPs)
chr5 (198-278)||(36977613-36977693)
chr5 (198-276)||(32270234-32270313)
chr5 (205-278)||(865807-865881)
chr5 (197-278)||(9771645-9771727)
chr5 (198-238)||(15936877-15936917)
[»] chr8 (1 HSPs)
chr8 (198-278)||(41636599-41636680)
[»] chr6 (1 HSPs)
chr6 (198-278)||(13193021-13193102)


Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 23 - 478
Target Start/End: Complemental strand, 6270650 - 6270195
Alignment:
Q  23 acgccaatcttcatccctccaaaaaaccgctccatcctccggttcgactcctcaatccggtcaaaccgctccgtcatctcggctcttacatggttgatat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6270650 acgccaatcttcatccctccaaaaaaccgctccatcctccggttcgactcctcaatccggtcaaaccgctccgtcatctcggctcttacatggttgatat 6270551  T
Q  123 cagcaagtatatgagcttgcatcggaacctgcaagaatatttaagttactgaatgtcaaaatacttattatgctgaatctcaaacaatgaatatttaagt 222  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6270550 cagcaagtatataagcttgcatcggaacctgcaagaatatttaagttactgaatgtcaaaatacttattatgctgaatctcaaacaatgaatatttaagt 6270451  T
Q  223 taccgaatctcaaaattactgtttaatttataagaaatgagtttgaaataactttttgaataataaaaaccatttttagaaaataacaaacggattttga 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6270450 taccgaatctcaaaattactgtttaatttataagaaatgagtttgaaataactttttgaataataaaaaccatttttagaaaataacaaacggattttga 6270351  T
Q  323 acctgcaagatttgtgtgacagtctcttcaagattctccatcttcttcgcaagctgaaagttacgataaacgttccagcgactagtggcgaggacttgat 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6270350 acctgcaagatttgtgtgacagtctcttcaagattctccatcttcttcgcaagctgaaagttacgataaacgttccagcgactagtggcgaggacttgat 6270251  T
Q  423 gagaaagctcaacgccggagcggagaatctcagagagacgatcaagatgagattgt 478  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6270250 gagaaagctcaacgccggagcggagaatctcggagagacgatcaagatgagattgt 6270195  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 43413539 - 43413620
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactttt 278  Q
    |||||||||||||||||||||||||||  |||| ||||||| |  | ||||| |||||  |||||||||||||||| |||||    
T  43413539 aatctcaaacaatgaatatttaagttagtgaatatcaaaatctcttttttaacttatatcaaatgagtttgaaatacctttt 43413620  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 30389694 - 30389762
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaattact-gtttaatttataagaaatgagtt 265  Q
    |||||| |||||||||||| |||||| | |||| |||||||||||  |||||||||||| |||||||||    
T  30389694 aatctctaacaatgaatatctaagttgctgaatgtcaaaattactcttttaatttataacaaatgagtt 30389762  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 29152995 - 29153074
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactt 276  Q
    ||||||||||||||||||| |||||||  |||| ||||||| |  | ||||| |||||  ||||||||||||||||||||    
T  29152995 aatctcaaacaatgaatatataagttagtgaatgtcaaaatattttttttaacttataccaaatgagtttgaaataactt 29153074  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 36699975 - 36699894
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaattactgttt-aatttataagaaatgagtttgaaataactttt 278  Q
    |||||| |||||||||||||||| |||  |||| |||||||  || ||| || |||||  ||||||||||||||||||||||    
T  36699975 aatctcgaacaatgaatatttaaattagtgaatgtcaaaatctcttttttaacttatatcaaatgagtttgaaataactttt 36699894  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 36716079 - 36715998
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaattactgttt-aatttataagaaatgagtttgaaataactttt 278  Q
    |||||| |||||||||||||||| |||  |||| |||||||  || ||| || |||||  ||||||||||||||||||||||    
T  36716079 aatctcgaacaatgaatatttaaattagtgaatgtcaaaatctcttttttaacttatatcaaatgagtttgaaataactttt 36715998  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 51162001 - 51162082
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactttt 278  Q
    |||||| ||||||||||||||||||||  |||| ||||||| |  | ||||| |||||  |||||| |||||||||||||||    
T  51162001 aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatatcaaatgaatttgaaataactttt 51162082  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 43094596 - 43094518
Alignment:
Q  199 atctcaaacaatgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactt 276  Q
    ||||| ||||||||||||||||||||  |||| ||||||| || | ||||| |||||| ||||||||||||||||||||    
T  43094596 atctcgaacaatgaatatttaagttagtgaatatcaaaatctattttttaacttataacaaatgagtttgaaataactt 43094518  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 9157646 - 9157565
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactttt 278  Q
    |||||||||||||||||||||||||||  |||| ||||||| |  | ||||| |||||  ||||||||||||||||||||||    
T  9157646 aatctcaaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatatcaaatgagtttgaaataactttt 9157565  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 16476476 - 16476547
Alignment:
Q  209 atgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataacttttt 279  Q
    ||||||||||||||||   ||| ||||||| || | |||||||||||| |||||||||||||||||||||||    
T  16476476 atgaatatttaagttagtaaatgtcaaaatctattttttaatttataataaatgagtttgaaataacttttt 16476547  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 47117739 - 47117814
Alignment:
Q  199 atctcaaacaatgaatatttaagttaccgaatctcaaaa-ttactgtttaatttataagaaatgagtttgaaataa 273  Q
    |||||| |||||||||||||||||||  |||| |||||| ||| | |||||||||||  |||||||||||||||||    
T  47117739 atctcagacaatgaatatttaagttaatgaatgtcaaaatttattttttaatttatactaaatgagtttgaaataa 47117814  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 21646965 - 21646886
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaattactgttt-aatttataagaaatgagtttgaaataactt 276  Q
    |||||| ||||||||||||||| ||||  |||| |||||||  || ||| ||||||||| ||||||||||||||||||||    
T  21646965 aatctcgaacaatgaatatttaggttagtgaatgtcaaaatatcttttttaatttataacaaatgagtttgaaataactt 21646886  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 276
Target Start/End: Original strand, 41670286 - 41670361
Alignment:
Q  202 tcaaacaatgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactt 276  Q
    |||||||||||||||||||||||  |||| ||||||| || | ||||| |||||  ||||||||||||||||||||    
T  41670286 tcaaacaatgaatatttaagttaatgaatgtcaaaatctattttttaacttatatcaaatgagtttgaaataactt 41670361  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 33891838 - 33891919
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactttt 278  Q
    |||||| ||||||||||||||||||||  |||| ||||||| |  | ||||| |||||  ||||||||||||||||||||||    
T  33891838 aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatatcaaatgagtttgaaataactttt 33891919  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 5998058 - 5998137
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactt 276  Q
    |||||| ||||||||||||||||||||  |||| ||||||| |  | ||||| |||||  ||||||||||||||||||||    
T  5998058 aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatattaaatgagtttgaaataactt 5998137  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 7634635 - 7634595
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaat 238  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  7634635 aatctcaaacaatgaatatttaagttagtgaatatcaaaat 7634595  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 42460935 - 42460859
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaattactgtt-taatttataagaaatgagtttgaaataa 273  Q
    |||||| ||||||||||||||| ||||  |||| |||||||  || || ||| |||||| |||||||||||||||||    
T  42460935 aatctcgaacaatgaatatttaggttaatgaatgtcaaaatatcttttataacttataacaaatgagtttgaaataa 42460859  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 36977613 - 36977693
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaattactgtttaatttataagaaatgagtttgaaataactttt 278  Q
    |||||| ||||||||||||||||||||  |||| |||||||  || ||| |  ||||  ||||||||||||||||||||||    
T  36977613 aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaactatattaaatgagtttgaaataactttt 36977693  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 32270313 - 32270234
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactt 276  Q
    |||||| ||||||||||||||||||||  |||| ||||||| |  | ||||| |||||  ||||||||||||||||||||    
T  32270313 aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatatcaaatgagtttgaaataactt 32270234  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 865807 - 865881
Alignment:
Q  205 aacaatgaatatttaagttaccgaatctcaaaattactgttt-aatttataagaaatgagtttgaaataactttt 278  Q
    ||||||||||||||||||||  |||| |||||||  || ||| || |||||  ||||||||||||||||||||||    
T  865807 aacaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatattaaatgagtttgaaataactttt 865881  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 9771727 - 9771645
Alignment:
Q  197 gaatctcaaacaatgaatatttaagttaccgaatctcaaaattactgttt-aatttataagaaatgagtttgaaataactttt 278  Q
    ||||||| ||| ||||||||||||||||  |||| |||||||  || ||| |||||| |  ||||||||||||||||||||||    
T  9771727 gaatctcgaacgatgaatatttaagttagtgaatgtcaaaatctcttttttaatttaaatcaaatgagtttgaaataactttt 9771645  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 15936917 - 15936877
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaat 238  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  15936917 aatctcaaacaatgaatatttaagttaatgaatgtcaaaat 15936877  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 41636599 - 41636680
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactttt 278  Q
    |||||| ||||||||||||||||||||  |||| ||||||| |  | ||||| |||||  |||||||||| |||||||||||    
T  41636599 aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatattaaatgagtttcaaataactttt 41636680  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 13193021 - 13193102
Alignment:
Q  198 aatctcaaacaatgaatatttaagttaccgaatctcaaaat-tactgtttaatttataagaaatgagtttgaaataactttt 278  Q
    |||||| ||||||||||||||||| ||  |||| || |||| || | ||||| |||||  ||||||||||||||||||||||    
T  13193021 aatctcgaacaatgaatatttaagctagtgaatgtcgaaatctattttttaacttatatcaaatgagtttgaaataactttt 13193102  T

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