View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_8 (Length: 449)
Name: NF1704_low_8
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 24295190 - 24295640
Alignment:
| Q |
1 |
gtgagtaaacaaaaaatgcaatacccaaagtttgtagtctaactacggggtccaaagagtcattatctcacacatgctccttatgcaaggcattagagaa |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
24295190 |
gtgagtaaacaaaaaatacaatacccaaagtttgtagtctaactacggggtccaaagggtcattatctcacacatgctccttatgcaaggcattagaaaa |
24295289 |
T |
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| Q |
101 |
ccattgttttctctagtgccaaactgaaatagtcatttttgcataagtttttatattatactagattgacataaatcgcacggagacaattacaaattta |
200 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
24295290 |
ccattgttttctctagtgccaaactcaaataatcatttttgcataagtttttatattacacaagattgacataaatcgcacggagacaattacaaattta |
24295389 |
T |
|
| Q |
201 |
caaattatcaacaaaatgcaaaccaattagtaagaaattgacttttacctgcaa-gacgtaggttcaactctcatatactaaccctaaatgagcctgcgg |
299 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24295390 |
caaattatcaacaaaacgcaaaccaattagtaagaaattgacttttaccggcaaggacgtaggttcaactctcgtatactaaccctaaatgagcctgcgg |
24295489 |
T |
|
| Q |
300 |
gccacgcaactaacctcaccacaaattttaattcaaaaagaaatctatattttaaaccaactgcaatttcat-acaaaatttgatacccaagacaataac |
398 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
24295490 |
gccacgcaactaacctcacctcaaattttacttcaaaaagaaatctatattttaaaccaactgcaatttcataacaaagtttgatacccaagacaataac |
24295589 |
T |
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| Q |
399 |
tgcaaaatagtagcacttttgtaattattattaatttataattaactaaca |
449 |
Q |
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||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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| T |
24295590 |
tgcaaaatagtagtagttttgtgattattattaatttataattaactaaca |
24295640 |
T |
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