View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704_low_9 (Length: 447)
Name: NF1704_low_9
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 66 - 430
Target Start/End: Original strand, 3589726 - 3590089
Alignment:
| Q |
66 |
aattgaatatatgaattttcacaaaaatttctatttaaggtccttaaaagtattcttgagatgctcattagcatttctcatttttacaatatatttaatt |
165 |
Q |
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| T |
3589726 |
aattgaatatatgaattttcaccaaaatttctatttaaggtccttaaaagtattcttaagatgctcattagcatttctcatttttacaatatatttaatt |
3589825 |
T |
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| Q |
166 |
aatgttatacaactcaataacattttattggatatatatgttcaacacaaatgaatttgttttttaagaacacaaatgaatgttggatattaagtgtata |
265 |
Q |
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| T |
3589826 |
aatgttatacaactcaataacattttattggatatatatattcaacacaaatgaattt-ttttttaggaacacaaatgaatgttggatattaagtgtata |
3589924 |
T |
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| Q |
266 |
cttttctactagtttttacataaatataaaattcgatatattattgatgtgtgtcaagatcaagattcaaacaatcttattataagatattactttatta |
365 |
Q |
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| T |
3589925 |
cttttctactagtttttacataaatataaaattcgatatattattgatgtgtgtcaagatcaagattcaaacaatcttattataagatattactttatta |
3590024 |
T |
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| Q |
366 |
ttaatttctttatttgaggtgaataagggttgataagaattactagttttaatttcgataaaaac |
430 |
Q |
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| T |
3590025 |
ttaatttctttatttgaggtgaataagggttgataagaattactagttttaatttcgataaaaac |
3590089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3589647 - 3589682
Alignment:
| Q |
1 |
tacagatgattttagatttaatttttacgagcctct |
36 |
Q |
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| T |
3589647 |
tacagatgattttagatttaatttttacgagcctct |
3589682 |
T |
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