View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705-Insertion-10 (Length: 596)
Name: NF1705-Insertion-10
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705-Insertion-10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 8 - 596
Target Start/End: Complemental strand, 43877528 - 43876948
Alignment:
| Q |
8 |
tggttggcaattgagaaaagagaagtgagaattaattaggaagataatgtagggtgcattccatttccagtaatgttaggtcactatcggacagtaacaa |
107 |
Q |
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| T |
43877528 |
tggttggcaattgagaaaagagaagtgagaattaattaggaagataatgtagggtgcattccatttccagtaatgttaggtcactatcggacagtaccaa |
43877429 |
T |
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| Q |
108 |
gtttttaagtccttcacccaccactgtccctcccaattataaggctagatatgtgcaagatataagtaattgtttctttctattcaactgtagaaacatg |
207 |
Q |
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| T |
43877428 |
gtttttaagtccttcacccaccactg----tcccaattataaggctagatatgtgcaagatataagtaattgtttctttctattcaactgtagaaacatg |
43877333 |
T |
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| Q |
208 |
aacaacacgggttgtatgtgatcaaattgcttctttccttgctaacattttcttggtccggtcaagataaataatcttaaaatctcacnnnnnnnnaggt |
307 |
Q |
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| T |
43877332 |
---aacacgggttgtatgtgatcaaattgcttctttccttgctaacattttcttggtccggtcaagataaataatcttaaaatctcacttttttttaggt |
43877236 |
T |
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| Q |
308 |
aaatcttaaacctcacttttaaaacttagctcataataaatctcacnnnnnnnnaggtaaatctttaatctcacttttaaaatttagctcatcagataat |
407 |
Q |
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| T |
43877235 |
aaatcttaaacctcacttttaaaacttagctcataataaatctcacttttttttaggtaaatctttaatctcacttttaaaatttagctcatcagataat |
43877136 |
T |
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| Q |
408 |
acatttaaacacatatatacatcggacaatcaaannnnnnngatattgtataagacttcaacaagacaaatcgaagtggttctaattgggagggagcacc |
507 |
Q |
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| T |
43877135 |
acatttaaacacatatatacatcggacaatccaattttttt-atattgtataagacttcaacaagacaaatccaagtggttctaattgggagggagcacc |
43877037 |
T |
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| Q |
508 |
cgccacaataaccttttattttattactaattacttccttgaattcgatagattttgggtttgagcccactagtgtatttgaagggagg |
596 |
Q |
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| T |
43877036 |
cgccacaataaccttttattttattactaattacttccttgaattcgatagattttgggtttgagtccactagtgtatttgaagggagg |
43876948 |
T |
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